Tpre012370.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:816012-818901[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.4 1.2e+02 2.9 0.0 5 21 491 507 490 508 0.92 2 11 4e-05 0.00065 19.5 2.8 1 23 544 567 544 567 0.97 3 11 0.00056 0.0092 15.9 0.5 1 23 573 596 573 596 0.96 4 11 1e-06 1.7e-05 24.5 1.5 1 23 602 625 602 625 0.97 5 11 0.00016 0.0025 17.7 1.9 1 23 631 654 631 654 0.94 6 11 4.5e-05 0.00073 19.4 2.6 1 23 660 683 660 683 0.95 7 11 0.0005 0.0082 16.0 2.5 2 23 690 712 689 712 0.94 8 11 1e-06 1.7e-05 24.5 3.3 1 23 718 741 718 741 0.98 9 11 0.00052 0.0084 16.0 2.9 1 23 747 770 747 770 0.95 10 11 0.00019 0.0032 17.4 3.0 1 23 776 799 776 799 0.96 11 11 0.00016 0.0026 17.6 0.7 3 23 807 828 805 828 0.96
Sequence Information
- Coding Sequence
- ATGGAAAGTAGAGAGGACCAAGTGAggGTGAAGGAAGAATCGAACAATACTTGGCAAGATGTAGGTgacgataatatttttcattcggttGACTTTGATTTCGAAGTTAAAAACGTTGAAACATTAACGTTTTTTCAATCATCGggaAATGTTATAAACGAGGTTATGTCGTTGCAGAAACAGTTagatgataaaatattcattgattcaaaGTGCAGAGACGTTAAACCCGAACTGACTTCTCTATCAACAATCGTCTGTAAAACTGAGTATCAAAGTAGTCCATcgattgtgaaaatagaaaatgagaatcaaatatatgatataaatgaaaaaatatttattgacttTGAGTGCAAAAGTGTTGAGGTTCAACCGTCATCTTCATCAACAACCATTTGCAAGTTTGAGCATAAAAGCTCAGAACCTATTCTAAAGAAAGAAGACCAAAATCAAATCAatgacttgaataaaaatatagttgATTTAgggtacaaaaatattaaaattgaaccGACCACTTTATCAACAACCATTTGCAAGTCTGAGTATAAAAGCTCAGAACCTATTgtgaagaaagaaaacgaaaatcagACCAatgacttgaataaaaatatagtcATTGATTTagagtgcaaaaatgttaaactagaaccaaattttttatcaacaacTATTTGCAAGTTTGAGTATAAAAGCTCTGAACTGattgtgaaaaaagaagacgaaatTCAGACCAatgaattgaataataatatagtcaTTGAATTAGAGTGCAAAAACGTTAAACTAGAACCAAATTCTTTATCAACAGCCATTTGCAAGTTTGAGCATAAAAGAACTGAACCtatcgtgaaaaaagaaaacgaaaatcagACCAATgacttaaataaaaatatagccATTGGTTTAGAGTGCAAAAAAGTTAAACTTGAGCCAACATCTTTATCGAAAACCGTTTGCAAGTCTaacgatcaaaattttgaaccatttgtgaaaataaaagacgAAAATCAGACCAATgccttaaataaaaatatagccATTGGTTTAAAGTGCAAAAAAGTTAAACTTGAACCAACTTTTTTATCGACAACCGTTTGCAAGTCGaactgtaaaaattttgaaccgattgtgaaaatagaaaaggaaaataaaaccAATAACATAAAAGATAATATCTTCATTGTTTTTGAGTGCAAGGATATTAAAACTGCATCTGAAATGAAGTCTTTATCGACAAACATTTGCAATTCAGAGTATAAAAGCTCTGAAcctaataagaaaaaagaaaaggaaaattcaattaattacatGGACGAAAAAAgtctaataattttgattaaaaagggatataattacaataatcaTTGTCAATTTGAAGTAAACGGAAGTTTGAAACTATCCGAATATGAGAAGTTAAATGTGTTTGCAAAAATTGTTGAACAAAAATCATCATTGCAATCACAAATATGTCGAAAATTATATACAGCAAAAGTTAGtctaaaaaatcatatcaatGCGATAGATAAAAGCATTAGTTCGTATGAGTCTGAAGCATGCAATGAATCATATTTCTGTAAAAAACTCCAAATTCATTCAAAAGAGATGCATGATAGCGGCAAGCTCttcaaatgtgacatttgtcataaaacatttggaaaaaaatttaatctttatattcacataaattcagtacacaatcgaagcaaattttttgaatgtgacagatgtaacaaatcatttaaagcaaaaaatggCCTAAAATATCACCTGATTGTAGTACATGATCGCAACAAACTcttcgagtgtgaaatttgtcacaaatcattttcaaccAATGGTTACCTTAAAACACATCTGAATGTAatacataatcagagcaaaccctttgaatgtgatatttgccataAAGCATTTGGACAAAGATGTAACCTCAATACTCACGTTAATGCAGTACACGATCGTATCAAACTCcacgaatgtgagatttgtcacaagcCATTTTCAAACAGGCGTGACATGAAAAGACACATAGATTCAGTTCACAGGCTTATAAAATCCTCCGAGTGTGCGATTTGCCACAAAGCATTTGGACACCAGGCAACTTTAAAACATCACATTAAGGCAGTACATATTCTTAACAAAgccttcgagtgtgatatttgtcataaatcatgtGTTCGCAAGGGTGATCTCAGAAGACACATAAGAACGGTACACGATCGTatcaaaccttttgaatgtaatatttgtcacaGATTATTTGCAAGTATGAGTCATCTTAACAGGCACACAGATTCAGTTCATGGTCGGAAAAAACCATTCGAATGTGAAACTTGTCACAGGTCATTTGGTCAAATATAtcatctcaaaactcacatgaATGCAGTGCATTATGGTAAAAAACCCTTTGGTTgcgaaatttgtcaaaaatcattttcattcaagtcTCGCCTCAAAGCTCACGTTCTGAAAGTACATTTTGGAGTACACTCCAAGATCGTGAGATAA
- Protein Sequence
- MESREDQVRVKEESNNTWQDVGDDNIFHSVDFDFEVKNVETLTFFQSSGNVINEVMSLQKQLDDKIFIDSKCRDVKPELTSLSTIVCKTEYQSSPSIVKIENENQIYDINEKIFIDFECKSVEVQPSSSSTTICKFEHKSSEPILKKEDQNQINDLNKNIVDLGYKNIKIEPTTLSTTICKSEYKSSEPIVKKENENQTNDLNKNIVIDLECKNVKLEPNFLSTTICKFEYKSSELIVKKEDEIQTNELNNNIVIELECKNVKLEPNSLSTAICKFEHKRTEPIVKKENENQTNDLNKNIAIGLECKKVKLEPTSLSKTVCKSNDQNFEPFVKIKDENQTNALNKNIAIGLKCKKVKLEPTFLSTTVCKSNCKNFEPIVKIEKENKTNNIKDNIFIVFECKDIKTASEMKSLSTNICNSEYKSSEPNKKKEKENSINYMDEKSLIILIKKGYNYNNHCQFEVNGSLKLSEYEKLNVFAKIVEQKSSLQSQICRKLYTAKVSLKNHINAIDKSISSYESEACNESYFCKKLQIHSKEMHDSGKLFKCDICHKTFGKKFNLYIHINSVHNRSKFFECDRCNKSFKAKNGLKYHLIVVHDRNKLFECEICHKSFSTNGYLKTHLNVIHNQSKPFECDICHKAFGQRCNLNTHVNAVHDRIKLHECEICHKPFSNRRDMKRHIDSVHRLIKSSECAICHKAFGHQATLKHHIKAVHILNKAFECDICHKSCVRKGDLRRHIRTVHDRIKPFECNICHRLFASMSHLNRHTDSVHGRKKPFECETCHRSFGQIYHLKTHMNAVHYGKKPFGCEICQKSFSFKSRLKAHVLKVHFGVHSKIVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -