Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:343579-345123[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 8.2e-06 0.00013 21.7 0.7 1 23 167 190 167 190 0.93

2 8 1.8e-06 3e-05 23.7 0.7 3 23 197 218 196 218 0.95

3 8 2.9e-06 4.7e-05 23.1 1.3 1 23 223 246 223 246 0.95

4 8 2.3e-06 3.8e-05 23.4 2.2 1 23 251 274 251 274 0.95

5 8 1.3e-05 0.00022 21.0 4.9 1 23 279 302 279 302 0.96

6 8 0.00019 0.003 17.4 0.4 1 23 307 330 307 330 0.94

7 8 3.5e-06 5.7e-05 22.8 3.7 1 23 335 358 335 358 0.97

8 8 4.9e-05 0.0008 19.2 0.3 1 23 363 386 363 386 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	8.2e-06	0.00013	21.7	0.7	1	23	167	190	167	190	0.93
2	8	1.8e-06	3e-05	23.7	0.7	3	23	197	218	196	218	0.95
3	8	2.9e-06	4.7e-05	23.1	1.3	1	23	223	246	223	246	0.95
4	8	2.3e-06	3.8e-05	23.4	2.2	1	23	251	274	251	274	0.95
5	8	1.3e-05	0.00022	21.0	4.9	1	23	279	302	279	302	0.96
6	8	0.00019	0.003	17.4	0.4	1	23	307	330	307	330	0.94
7	8	3.5e-06	5.7e-05	22.8	3.7	1	23	335	358	335	358	0.97
8	8	4.9e-05	0.0008	19.2	0.3	1	23	363	386	363	386	0.89

Sequence Information

Coding Sequence: ATGGAATCCAACGGCGTATTTAACTGGgctgtcagAGTAAAAACTGAGCCTTGCCATGAGTCACTTTTGGAAAACAATAGTAATATAATTGACAAGACTCGAGATGGGCAGGATGTTAAATTCTCAAGATTTCTGCGAGAAAATCCAAACCACGGGTTTCAAGAATATGACGGAATGTCTGAACCTCGTGAAGACATGGAAATAGTTTTGGAATGTCAAGATCTGAAGCcgagttttaatttattggcAGTTCAGAAAATCGAAGACTATTCGGAAAACTTGCACAATACTAAATATATTCGAGATTATccgaataaaattaaaatagaaaatatggatggagtgaaaaaagaatatttcgGTAACGTTTCGGAAGAATCGAGTTTGAATTTAAACTGCGAATTTagcgagcaaaaagaaaaaggaagaattACAACAGATTTCAACGACCAACAGAGATTACAAACCCACATCAATCCGAAGCATAGTAGTTCTGCCCACGCATGTAATGTTTGCGGAAATAAATTCTCAACTAAgggtaatctcaaaactcacatcaaTGCAGTGCACTTAGGTGTCAAAGTTGCATGCAATGTatgcgaaaagacattcacaaaaaaaagtgatctcaaaagacacatagattcggtgcacaacggaatcacacatgcatgtgatatttgcggaaaaaagTTCTCAGATAAAAGTAGTGCCAAAAGGCACATTGATACCACGCACAACGGTGTTACCCATCGGTGTgatatttgtagaaaaaatttttcaagtaagaGTAATCTCAATACCCATATCGATTCGATACACAATGGTGTCACccataaatgtgatatttgtggaaagacatgCAAAGATAGAAGTTATTTCAAaagacacatcgattcggtgcacaacggtatcacacatgcatgtgaaatATGCGGAAATAAATTCTCAATTAAGGGTAATCTtaaaacccacatcgattcggtacaCAGTGGTGTCACccataaatgtgatatttgtagaaaaaatttttcaagcaagagtaatctcaaaacccacGTGAATGTGAAGCACATTGGTCTCACCCATGCATGTGATCtctgcggaaaaaaatttggacaaaaaaggaATCTCAAAGCCCACGCAGTTGTGGCGCATCACTCTGTTCTGGACAATTAA
Protein Sequence: MESNGVFNWAVRVKTEPCHESLLENNSNIIDKTRDGQDVKFSRFLRENPNHGFQEYDGMSEPREDMEIVLECQDLKPSFNLLAVQKIEDYSENLHNTKYIRDYPNKIKIENMDGVKKEYFGNVSEESSLNLNCEFSEQKEKGRITTDFNDQQRLQTHINPKHSSSAHACNVCGNKFSTKGNLKTHINAVHLGVKVACNVCEKTFTKKSDLKRHIDSVHNGITHACDICGKKFSDKSSAKRHIDTTHNGVTHRCDICRKNFSSKSNLNTHIDSIHNGVTHKCDICGKTCKDRSYFKRHIDSVHNGITHACEICGNKFSIKGNLKTHIDSVHSGVTHKCDICRKNFSSKSNLKTHVNVKHIGLTHACDLCGKKFGQKRNLKAHAVVAHHSVLDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01485260;
90% Identity: iTF_01484912;
80% Identity: iTF_01484912;