Tpre006097.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:888969-963792[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00012 0.002 18.0 0.6 2 23 1358 1380 1357 1380 0.94 2 12 4.9e-05 0.0008 19.2 3.2 1 23 1386 1409 1386 1409 0.95 3 12 0.00027 0.0044 16.9 4.7 1 23 1415 1438 1415 1438 0.98 4 12 0.1 1.6 8.8 3.5 1 23 1452 1475 1452 1475 0.96 5 12 7.8e-05 0.0013 18.6 2.7 1 23 1481 1504 1481 1504 0.94 6 12 0.00089 0.015 15.3 0.7 1 23 1510 1533 1510 1533 0.94 7 12 3.6e-06 5.9e-05 22.8 2.7 1 23 1539 1562 1539 1562 0.97 8 12 0.19 3.2 7.9 3.0 1 23 1568 1591 1568 1591 0.96 9 12 4.4e-06 7.2e-05 22.5 2.1 1 23 1597 1620 1597 1620 0.96 10 12 0.00063 0.01 15.7 0.6 1 23 1626 1649 1626 1649 0.94 11 12 2.2e-05 0.00036 20.3 1.3 1 23 1655 1678 1655 1678 0.97 12 12 0.00015 0.0024 17.7 0.7 1 23 1684 1707 1684 1707 0.97
Sequence Information
- Coding Sequence
- atgggATTGTTCGGGCCAAAGAGCAAAAATAACGAGGAAAATAGTTCCACGGGGGAAGGTATTTTGGAAATTGAtgttgtattaaaatatttagactCGTGCTCAAGCGCAGAAAGGCACGCAATTATAGCTAAGTATATGTCTAGCTCAGAGAGCGATGAGAGCGAGCATCCCCGAGATGATCGCACGGACGGCGTAGACAAATCAATAGATACCGCGCCCACACTCTCAAATCTAGTAGAACTTTTAAACCCAAATACAAGTTCCAATATGGCCCCCCCTACACAAGAAACACACACTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCGCAGGGCAGCGCTAGCACATCAAATGCTCAGACAACAACACAATACGCTATACCCATTAAAGAGGAGCCTCGTGACAATTGGGAAGATGTTGCCAACGAGAGTGTCGAACCGGGGGTCTCGGTCAAAACCGAAAACTCTGATGAATCATCGgcaaatccCACCAATGACTGTATTTCGTCGCAGCAGAAGGAAGATGAGGATATTCTGATAGATTGCGAGAGCGTATTGGTAAAACAGGAACATAAGCCCTCATTGACGACCATCTGCCAACCTACTGTAAAGGAAGAAGATCCAACAAATGACTCGAATGGAAAAAGgcttacaattttaattaaaaaaggattCGATTATGAGAAGAACCATCGATTTACCATTGGGGAAGAATCGAATTTAACAAGACAAATAGAAACGACGAATAAGGACGATGGATCACATGAATTAGAAATTTGCAAAACCGAAAACTCTGATGAATCATCGACGAATGAATCATCGGATgaaatttcgatcgaattggagaccgaaaatgtaaaacttgaaCCAAAGCCCTCATTGACGACCATCTGCCAAGCTACTGTAAAGAAGGAAAATCCGGGGTTCTCggtgaaaactgaaaaatctGATAAATCATCGACGAGTGAATCATCGgcaaatccCACTAATGACTCTACGATGGAAGAGGAGCCTCGTGACAATTGCGAAGATGTAGCCGACGTGAGTGTCGATCTGGCGTTCTCGGTGAAAACTGAAAACTCTGATGAATCATCGACGAATGAATCATCGGATgaaatttcgatcgaattggagaccgaaaatgtaaaacttgaaCCTAAGCCCTCATTGACGACCATCTGCCAAGCTACTGTAAAGGAGGAAAATCCGGGGTTCTCggtgaaaactgaaaaatctGATGAATCATCGACGAGTGAATCATCGGATGGAATTTCGATCGAATTGGAGAccgaaaatgtaaaacttgaaCCTAAGCCCTCATTGACGACCATCTGCCAAGCTGCTGTAAAGGAGGAAAATCCGGGGTTCTCGGTGAAAACTGAAAACTCTGATGAATCATCGACGACTGAATCATCGgctaATCCCACTAATGACTCTATGATGAAAGAGGAGCCTCGTGACAATTGCGAAGATGTAGCCGACGTGAGTGTTGATCCGGGGTTCTTGGTGAAAACTGAAAACTCTGAAGAATCATCGTCGAATGAGTCATTGGATgaaatttcgatcgaattggagaccgaaaatgtaaaacttgaaCCTAAGCCCTCATTGACGACCATCTGCCAAGCTGCTGTAAAGGAGGAAAATCCGGGGTTCTCggtgaaaactgaaaaatctGATGAATCATCGgcaaatccCACTAATGACTCTACGATGGAAGAGGAGCTTCGTGACAATTGGGAAGATGTAGCCGACGTGAGTGTCGATCTGGCGTTCTCGGTGAAAACTGAAAACTCTGATGAATCATCGACGAATGAATCATCGGATgaaatttcgatcgaattggagaccgaaaatgtaaaacttgaaCCTAAGCCCTCATCAACGAACATCTGCCAAACTACTGTTAAGGAAGAAAATCCAACAAATGACTTGAATGGGAAAAGgcttacaattttaataaaaaaaggattcaatTACGATAGTAATCGTAAATTTACCGGAGAAGAAGCGACTTCAACAAGCCAAATGAAAACGACACATAAGGGCATTGGATCacttgaatgtgaaatttgtcataaatcatttagaAAACCAAGTGTACTTAAAGCGCACGTGAATcaagtacatgataaaatcaAACCTTTccagtgtgaaatttgtcacaaatcatttggacaaaaacaacacctcaaaaatcacgtgaatgcagtacataatcagagcaaaccctttgagtgtgagatttgtcacaaatcattttcatgcaAGGGTGATCTAAATAAACATACAAGGACAGTACATCCAATCAAAAGACAAGGACAATACGATCGTAGTAAACCTTTTGAGTGTGAGTTTTGTCACAAagcatttggactaaaaagtaaccataaaaaacatataagtgtagtacataatcggagcaagcccttcgagtgtgattcttgtcataaatcattcggacaaaagagtcatctcaaaactcacataataGCGGtgcataatcggagcaaacccttcgagtgtgattTTTGTCACAAAgcatttggactaaaaggtGACCTTAAAAAACATAtaagtgcagtacataatcggatcaaacccttcgattgtgacatttgtcacaaatcattttcattcaaggGTGATCTAAATAGACATacaaggacagtacacgatcgtagcaaaccttttgagtgtGAGTTTTGTCACAAagcatttggactaaaaagtGACCATAAAAAACATATAAgtgtagtacataatcggagcaaacccttcgagtgtgacatttgtcacaaatcatttaaagaaaagaataacctcaataaacacataaatttAGTACATTTTCTCagtaaacccttcgagtgtgagtTTTGTCACAAAgcatttggactaaaaggtGACCTTAAAAGACATAtaagtgcagtacataatcggatcaaacccttcgagtgtgacatttgtcacaaatcatttggacgaaaaggtGACCTCGCCACTCATACAAAGAGAGTACATcttcggagcaaaccctttgagtgtgaaatttgtcacaaatcatttggataccctAGTGTACTCAAATCTCACGTAAAGTCAGCTCATGAACAGAGAAAATCTGAATGTTAG
- Protein Sequence
- MGLFGPKSKNNEENSSTGEGILEIDVVLKYLDSCSSAERHAIIAKYMSSSESDESEHPRDDRTDGVDKSIDTAPTLSNLVELLNPNTSSNMAPPTQETHTSTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPQGSASTSNAQTTTQYAIPIKEEPRDNWEDVANESVEPGVSVKTENSDESSANPTNDCISSQQKEDEDILIDCESVLVKQEHKPSLTTICQPTVKEEDPTNDSNGKRLTILIKKGFDYEKNHRFTIGEESNLTRQIETTNKDDGSHELEICKTENSDESSTNESSDEISIELETENVKLEPKPSLTTICQATVKKENPGFSVKTEKSDKSSTSESSANPTNDSTMEEEPRDNCEDVADVSVDLAFSVKTENSDESSTNESSDEISIELETENVKLEPKPSLTTICQATVKEENPGFSVKTEKSDESSTSESSDGISIELETENVKLEPKPSLTTICQAAVKEENPGFSVKTENSDESSTTESSANPTNDSMMKEEPRDNCEDVADVSVDPGFLVKTENSEESSSNESLDEISIELETENVKLEPKPSLTTICQAAVKEENPGFSVKTEKSDESSANPTNDSTMEEELRDNWEDVADVSVDLAFSVKTENSDESSTNESSDEISIELETENVKLEPKPSSTNICQTTVKEENPTNDLNGKRLTILIKKGFNYDSNRKFTGEEATSTSQMKTTHKGIGSLECEICHKSFRKPSVLKAHVNQVHDKIKPFQCEICHKSFGQKQHLKNHVNAVHNQSKPFECEICHKSFSCKGDLNKHTRTVHPIKRQGQYDRSKPFECEFCHKAFGLKSNHKKHISVVHNRSKPFECDSCHKSFGQKSHLKTHIIAVHNRSKPFECDFCHKAFGLKGDLKKHISAVHNRIKPFDCDICHKSFSFKGDLNRHTRTVHDRSKPFECEFCHKAFGLKSDHKKHISVVHNRSKPFECDICHKSFKEKNNLNKHINLVHFLSKPFECEFCHKAFGLKGDLKRHISAVHNRIKPFECDICHKSFGRKGDLATHTKRVHLRSKPFECEICHKSFGYPSVLKSHVKSAHEQRKSEC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -