Tpre003110.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trichogramma pretiosum
Gene Symbol
-
Assembly
GCA_000599845.3
Location
NW:242556-249233[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.031 0.51 10.4 0.0 1 23 264 287 264 287 0.96
2 16 0.33 5.4 7.2 0.9 1 23 295 317 295 317 0.97
3 16 0.00039 0.0063 16.4 0.8 1 23 344 366 344 366 0.99
4 16 7.8e-05 0.0013 18.6 0.5 2 23 373 395 372 395 0.94
5 16 0.018 0.3 11.1 0.4 1 23 401 423 401 423 0.97
6 16 0.023 0.38 10.8 0.6 1 23 429 451 429 451 0.95
7 16 0.004 0.066 13.2 0.4 3 23 459 479 457 479 0.96
8 16 0.023 0.37 10.9 1.1 1 23 485 507 485 507 0.96
9 16 0.00048 0.0079 16.1 4.4 1 23 513 536 513 536 0.98
10 16 0.00014 0.0023 17.8 0.8 2 23 671 692 671 692 0.98
11 16 0.00024 0.0039 17.1 2.4 1 23 698 721 698 721 0.96
12 16 0.00031 0.005 16.7 2.6 1 23 727 749 727 749 0.97
13 16 1.3e-05 0.00022 21.0 3.8 1 23 755 777 755 777 0.97
14 16 0.0067 0.11 12.5 1.8 1 23 783 805 783 805 0.97
15 16 1.3e-05 0.00021 21.1 0.3 1 23 811 833 811 833 0.97
16 16 0.0011 0.017 15.0 4.5 1 23 839 862 839 862 0.98

Sequence Information

Coding Sequence
ATGAACGAAACAACCTCTGGTGAGGTGTCAATGGAAGTGAGCACTGGGGGtggtaaacaaaaatttcttattcaTGCTAACGATCATAGCGAAAAGAACTTGGGTGCAATGAAGAATGAAGATATTAACAGTGAAGATTTTCCATCTCATTTTGAAGCTTTGGAAGAGACAAATAATATAGATCAGAACCTTGTTTCAATATGCAATGTAAAAGCTACTACCTCTTCTCCTGAACTTATTATTGGAGACAAACAAGTCATTATTTGGGACGAACTTTGCAGAGTTTGTGCAACATCAAACGAAAAACTTGTATCAGTATTTGGTACTGAAGGAACACAGTATGAGttagaaacaaaaattcaagaatatcTACCACAGATAAGGctttctCAGGATGATTTTCTTCCCATGAAAGTATGTTACCattgtatttcaattttagtaGGATGGcatgatatatatacaaaatgcGATCAAGCACAAGAAAGACTATTGGAATTGCATCAACAATTGCATCCAAAGGATCAGCCTCTTCATTTATCAACATCTGAAGAAATAAGTTTAAGCAATGAAGAGAACCACAGTATTGACATGAAAGAagaaattcaACATTATGATCCAAACTTACTCGCAGTTTCATCAGATAACAATGTGAATATTCCTGAAAATAAAAgAGCCAACGGGGTCGACGGCATCGAACATCCCGCAGTCTCGCCGAATGACTACTCCGAGGACTGCTCCTCGCCCGCTGTCCCGAGTAGTAACACTGGCGACGTCGCAACGACCCTGTACCAGTGCGGCGTCTGCGAGTTGCTGTTCGAGCAAGAGATCGAGCTCTTGAGACACCTCAAGGGCGCGCACAAGTCGCCCGCCAACTTGGAGTACCAGTGCACGCTGTGTCTGCGCAAGTTCTTGTCCAAGGTGCGCCTGGTCCGGCATCTGGCCAATCACAGGCACAACAACGACCTCGTGAATGCGGAGTCGATCGCCGCAGAGAGGCAGAGAATCCCCGAGAATTCGGGCCACCATTACAAGTGCGAGCTCTGCCAGAAGATCCTGAGCTCGCGCCTCAACATGATTCGGCACTTGCGAATGCACAAGGACGAGCGATTGTCGGTCTGTCACGTCTGCGGCAAGTCATTCCGCTCGGACGGCGACGTCAAGCGTCACATCAACGACGTGCACCTGAAGCTGAAACGCCACTCGTGCGGGTACTGCGACCGGGCATTCGCCGCCAAGGCCACCAAAGACGCCCATCAGAGAATACACACGGGCGAGAAGCCGTTCCTGTGCAGCCAATGCCCGAGGCGCTTCCGCTCGATCAATCTGCTCGGCGTGCACAAGAAGGTGCACGAGAATCATCGGCCCTTCGGCTGCGCCTACTGCCCCAAGACGTTCCGCTCCAAGCAGAAGGTGCAGGTGCACGAGTCCGTACACACGGGCtacaaacccttcgagtgcgACGTCTGCGGCAGCGCGTTCTCGTCCAAGGGCGAGTGCAAGAGGCACAGCATAAGCCATTCGAGCGAGCGACCTTTCGAGTGCAGCCTGTGCGACAAGTCGTTCAAGCTCAACAAGTACCTGAGAGGTCACTTGAGAAAGTGCCATCCCAAAGAAGCCCCTGATATCCTTTATCAGATGGATAATTACACCAAGAAGAGACAACCTCGAGAACGAATTGTCAAGGAGTTCCGCAAAGTTTACGTGCCAGGTATGCCAGTGTTAAACGACGAACCCGAGCCAcccaaaaagaaaagactcACAAAAAAAGCCACCGCCACTGACGCCAGCCTATCAAAGAAACGGAAAAAAACATTGGTCGGAAAAGCgttgaaaaaatcagaaaaaacgACCAATTCTAAGCAAACATCGAAAGAAACCGCGGCATCCTCCGCGGATAAAGACAAACCCACAGATGTCAATGACAACAAGGGAACAACGCCTAGCCAGGATTTGGACGATTCGTTCGAAGACTCAGTGTTTCCAccgaaaaagaagagagtaAATCGCACTTGTTCGGATTGCGGTAAAAAATTCCGACTCGAGGAGAGCTACCAGATGCATCTTCGAGTGCACCAGGGCTTGCTGCCGTATATCTGCAAGCAGTGTGGCAAGCAATTTAGCCAGAATGGAAGTCTCTACTATCACGAGAGACACGTCCACGGTGGCGTGAAAAATCATGTCTGCGAGATATGCAAACGCTGCTTCGCCATGAAGACCGCCCTGGAGGACCACAGGCGAATCCACACGGGTGAGCGGCCTTATTTCTGCGAGCACTGCGGCAAGTCCTTCAAAACGAAGGCGTCGCTCTACATACACCGCAAACTGCACACGGACGAGTTTCCTTTTAAATGCAGCTACTGTAATAAGGCCTTCCGATGGAAGCAGCAGATGGTCAGTCACGTGACGACGCACACTGGCGAAAAGAATCACATCTGCGAGATCTGTGGCAAAGGCTTTGGAGTGAAGAATGAGCTCACGCGGCACATACTAACTCATTCGACGGAAAAACCCTTCAAGTGTGAAACGTGTCATATCAGTTTTGGTCAGCAGAGATACTTGACTAATCACAACAGAACGAAGCATAAAATTACGCAGAACGAAAATGAAAGTTTAACTTTGCTAAGCTAG
Protein Sequence
MNETTSGEVSMEVSTGGGKQKFLIHANDHSEKNLGAMKNEDINSEDFPSHFEALEETNNIDQNLVSICNVKATTSSPELIIGDKQVIIWDELCRVCATSNEKLVSVFGTEGTQYELETKIQEYLPQIRLSQDDFLPMKVCYHCISILVGWHDIYTKCDQAQERLLELHQQLHPKDQPLHLSTSEEISLSNEENHSIDMKEEIQHYDPNLLAVSSDNNVNIPENKRANGVDGIEHPAVSPNDYSEDCSSPAVPSSNTGDVATTLYQCGVCELLFEQEIELLRHLKGAHKSPANLEYQCTLCLRKFLSKVRLVRHLANHRHNNDLVNAESIAAERQRIPENSGHHYKCELCQKILSSRLNMIRHLRMHKDERLSVCHVCGKSFRSDGDVKRHINDVHLKLKRHSCGYCDRAFAAKATKDAHQRIHTGEKPFLCSQCPRRFRSINLLGVHKKVHENHRPFGCAYCPKTFRSKQKVQVHESVHTGYKPFECDVCGSAFSSKGECKRHSISHSSERPFECSLCDKSFKLNKYLRGHLRKCHPKEAPDILYQMDNYTKKRQPRERIVKEFRKVYVPGMPVLNDEPEPPKKKRLTKKATATDASLSKKRKKTLVGKALKKSEKTTNSKQTSKETAASSADKDKPTDVNDNKGTTPSQDLDDSFEDSVFPPKKKRVNRTCSDCGKKFRLEESYQMHLRVHQGLLPYICKQCGKQFSQNGSLYYHERHVHGGVKNHVCEICKRCFAMKTALEDHRRIHTGERPYFCEHCGKSFKTKASLYIHRKLHTDEFPFKCSYCNKAFRWKQQMVSHVTTHTGEKNHICEICGKGFGVKNELTRHILTHSTEKPFKCETCHISFGQQRYLTNHNRTKHKITQNENESLTLLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-