Tpre009491.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:214122-216049[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00056 0.0092 15.9 1.9 1 23 24 47 24 47 0.96 2 13 7.3 1.2e+02 3.0 0.2 8 23 147 163 140 163 0.87 3 13 7 1.2e+02 3.0 0.4 7 23 175 192 175 192 0.89 4 13 0.00013 0.0021 17.9 1.2 1 23 227 250 227 250 0.96 5 13 2.5e-06 4.1e-05 23.3 1.6 1 23 287 310 287 310 0.97 6 13 1.1e-05 0.00018 21.3 3.0 1 23 316 339 316 339 0.97 7 13 4.7e-05 0.00077 19.3 5.2 1 23 345 368 345 368 0.93 8 13 1.4e-05 0.00023 20.9 4.0 1 23 374 397 374 397 0.97 9 13 0.00092 0.015 15.2 0.7 1 23 403 426 403 426 0.96 10 13 0.00028 0.0046 16.9 0.4 1 23 432 455 432 455 0.94 11 13 2.4e-06 3.9e-05 23.4 1.6 1 23 461 483 461 483 0.98 12 13 8e-05 0.0013 18.6 2.0 1 23 489 512 489 512 0.97 13 13 8e-05 0.0013 18.6 0.1 1 23 518 541 518 541 0.98
Sequence Information
- Coding Sequence
- ATGGAAAGTGGAGAAAACACATTGAGGTTAAAGGACATGGATGTAATGTCGGGCCGCATACATTTGCCATtcaaatgtgagatttgtcatgaATCATTTGAACTGGAAAGTGAATTCAAACGCCACAACAACtcagtacataatcaaagCGAACCCTGTGGATCTAAGGTTTTAGATGATATATTGGACCTAGAGAGTGAACTCGAGGGTCACAATTACTCAGAACATAATCAAAGCAAACCCTGTGAAAGTGAGATTTTCCCTGGTTCTTTTGAACTGCAAAGTGACCTTGAGAATCATAAGGACTCAGACCATTATCAAAGccaaccctttgaatgtgagactTTTCCTAATTCATTTGGACAGCAAAGTGACCTCGCGGGTCACAAGGATACGGACTATAATCATAGccaaccctttgaatgtgagactTTGAATGAATCATTTAAACTAGAAAGTAAGCTCGAACGTCACAAGGACTCAACACATAAACCACGGACAAACTTTGAACGCGAGATTAGTCATCGATCATTTGAACTGCAAAGTGACCTTGAGAATCATAAGGACTCAGACCATTATCAAAGCCaactctttgaatgtgagacTTTTTCTGATTCATTTGGACAGGAAAGTGGCCTCAGGGGTCAAGAAGACAAAGACCATAATCAGAAAGAAACCtttgaatgtaagatttgtcacCGATCATTTGAACTGGAAAGTGACCTCAAGAGTCACGAGGAAACAGATCATAATGAGAAGAAACCTTATGAATGTGTAATTACACATTTCCCCAAATCATTGGGAACAAAAAGCAATCTCAATAATCAAGTAAATACAGCACATAGCCGTAGCAAATCCTTCGactgtgagatttgtcataaatcattcggACGAAAGGGTActctcaataaacacataagtACAGtccataatcggagcaaaccctttgaatgtgaaaagtgtcacaaatcattcggacaAAAAGGTCATCTTGTAACTCATATtagtacagtacataatcggagcaaaccctttgaatgtgaaatttgtcacaaatcatttggacacaaGCATAACCTCAATAAACACACAAGTGCAGtccataatcggagcaaaccctttgaatgtaaaaagtgtcacaaatcattcggacaAAAAGGTCATCTTGTAACTCATATtagtacagtacataatcggagtaaaccctttgaatgtgatatttgtcacaaatcatttggattaaAGAGTattctcaaaaatcacatagTTACAGTACATAagcggagcaaaccctttgaatgtgaactTTGTCATGAATCATTTGGAGTAAAGGGTACcctcaaaaaacacataagtGCAGtccataatcggagcaaaacctttgaatgtgaaatttgtcacagaACATTTGGACAAGAGAGTactctcaaaactcacatgaACATACATTATCAGATCAAACCCTTTGTTTGCGAGATTTGTCGCAAATCGTTTGGGTTAAAAAGTTACCTCAATAAACACACCAATAGAAAACATAAGCATTACAAACCCTACAAATGTGAATTTTGTCCCGAATCATTCGGCACAAAGGGCAGCCTCGATGAACACATAAAATCGGCACATCCCTTTGAGACTGGTTAG
- Protein Sequence
- MESGENTLRLKDMDVMSGRIHLPFKCEICHESFELESEFKRHNNSVHNQSEPCGSKVLDDILDLESELEGHNYSEHNQSKPCESEIFPGSFELQSDLENHKDSDHYQSQPFECETFPNSFGQQSDLAGHKDTDYNHSQPFECETLNESFKLESKLERHKDSTHKPRTNFEREISHRSFELQSDLENHKDSDHYQSQLFECETFSDSFGQESGLRGQEDKDHNQKETFECKICHRSFELESDLKSHEETDHNEKKPYECVITHFPKSLGTKSNLNNQVNTAHSRSKSFDCEICHKSFGRKGTLNKHISTVHNRSKPFECEKCHKSFGQKGHLVTHISTVHNRSKPFECEICHKSFGHKHNLNKHTSAVHNRSKPFECKKCHKSFGQKGHLVTHISTVHNRSKPFECDICHKSFGLKSILKNHIVTVHKRSKPFECELCHESFGVKGTLKKHISAVHNRSKTFECEICHRTFGQESTLKTHMNIHYQIKPFVCEICRKSFGLKSYLNKHTNRKHKHYKPYKCEFCPESFGTKGSLDEHIKSAHPFETG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -