Tpre000170.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:344344-346695[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00064 0.01 15.7 0.2 1 23 201 224 201 224 0.96 2 12 3.4e-05 0.00056 19.7 3.3 1 23 259 282 259 282 0.95 3 12 8.7e-06 0.00014 21.6 1.6 1 23 288 311 288 311 0.97 4 12 5.3e-05 0.00086 19.1 2.8 1 23 317 340 317 340 0.98 5 12 1.7e-05 0.00028 20.7 0.6 1 23 346 369 346 369 0.94 6 12 0.0026 0.043 13.8 2.8 1 23 375 398 375 398 0.96 7 12 3.2e-05 0.00052 19.8 3.2 1 23 404 427 404 427 0.95 8 12 1.6e-05 0.00026 20.8 1.0 1 23 433 456 433 456 0.96 9 12 0.0088 0.14 12.1 0.9 3 23 464 485 462 485 0.97 10 12 3.2e-06 5.2e-05 23.0 3.1 1 23 490 513 490 513 0.95 11 12 3.7e-05 0.0006 19.6 2.0 1 23 519 542 519 542 0.96 12 12 0.00036 0.0059 16.5 1.5 1 23 548 571 548 571 0.98
Sequence Information
- Coding Sequence
- atgtataaaaaagagatgaaaaaccTCGAGGACATAGTTAGGGTGAAGCAAGAGCCGAACGAGACTTGGTCAGATACGGTGGACTCTTGTGAATCGAACAACTTTAGAGCATTAACTTTTGGTGGATCGTCAgctaCTCACTTGAATGAGGGTATGGCGTTGCAGGAAAAGTTagatgaaaaacttttcgtaGATAGTGAGTACCGGGATATCAAAACTGAATGGAAGCCATTATCGACGAGTATCAACAAAACAGAGTACCAAAATTATCCgtcaattgtaaaaatagaaaacgaaaGTCAGAAGAATGACAAGAATGAAAATATGCTCATTGTTTTTGAGTGTAAGAATGTTAAGCCAgaactgaaatttttatcgaatgcCGCTTGCAAAACTGAGCCACAAAATTGTCTACCTATTgtgaaagtagaaaataatcaaattcagacaaataatttcaatgaaaaagaacaggaaattttggtaaaaaacgAGTTCATTGACGATAACGGTCCAATTCAAGTAAATcttcaattgaaatttgaagaatATAAGGAGGCGAAAACATCGAATACAACTTCTCAAAACATTGAATCATCTTATGAGTGtcaaaaatgtcgaaaaatttttaagggAGGAGCCAGTTTGAATGCACATATGAATGCAACACATAAAAGCCTTAGACTACAGGAATTTGAGATTTGCCGCAAGTCATTTGGAAACCAATGCACTTTCACAAATCGCGCAAACGAAGTACACGATAGTatcaaaccttttgaatgtgaaatttgtcaaaaatcgtTTAGACTAAGACATCACCttaaatctcacataaatggAGTACATGATGGCATCAAACCATTCgcatgtgagatttgtcacaagtcaTACGGCCGCAAGGAAACCCTTCGATCTCATATCAAGACAGTGCATAATCTtcgcaaacccttcgaatgcgAGATTTGTcttaaatcatttggataccagcaTCACCTCAAAGCTCACGTAAAAACAGTGCATGATCCTTGTAAACCTTTtcaatgtgacatttgtcataaattattCGAAGATAAAGGTAACCTCAAATCTCATATAATTGCATTGCATAATCGTAGCAaccccttcgaatgtgaaatttgtcataaatcatttggatgtCAGAGCACCTTGAAAAGTCACGCAATTACAGTACATATtcgtagcaaacctttcgaatgtaaaatttgctGGAAATCATTTTCACTAAGACATCACCttaaatctcacataaatggAGTACATGATTGCATCAAACCATTCgcatgtgagatttgtcacaagtcaTACGGCCGCAAGGAAACCCTTCGATCTCATATCAAGATAATACATGATCGGGTCAAACCCTTTGGATGTGAAATATGTCATAACTCATTTGGATATCAGAACACCTTGAAAAGTCACGCAATGACAGCACATATTCACAACccttttgaatgtaaaatttgcgGGAAATCATTTTCACTAAGACATCACCttaaatctcacataaatggAGTACATGATTGCATCAAACCATtcgcatgtgatatttgtcacaaatcttTCCAACGAAAAGAAACTCTTCAAATTCACACAactacagtacatgatcgtattaAACCGTtcaaatgtgagatttgtcgcaaatcatttggacttaAATGTGGCCTCAAAGCTCacgtaaatacagtacatgatcggatcAAATccttgaatgtgaaatttgtcacaagtgGTACGGCCGTAACGAAACCCTCCAATCTCACATAA
- Protein Sequence
- MYKKEMKNLEDIVRVKQEPNETWSDTVDSCESNNFRALTFGGSSATHLNEGMALQEKLDEKLFVDSEYRDIKTEWKPLSTSINKTEYQNYPSIVKIENESQKNDKNENMLIVFECKNVKPELKFLSNAACKTEPQNCLPIVKVENNQIQTNNFNEKEQEILVKNEFIDDNGPIQVNLQLKFEEYKEAKTSNTTSQNIESSYECQKCRKIFKGGASLNAHMNATHKSLRLQEFEICRKSFGNQCTFTNRANEVHDSIKPFECEICQKSFRLRHHLKSHINGVHDGIKPFACEICHKSYGRKETLRSHIKTVHNLRKPFECEICLKSFGYQHHLKAHVKTVHDPCKPFQCDICHKLFEDKGNLKSHIIALHNRSNPFECEICHKSFGCQSTLKSHAITVHIRSKPFECKICWKSFSLRHHLKSHINGVHDCIKPFACEICHKSYGRKETLRSHIKIIHDRVKPFGCEICHNSFGYQNTLKSHAMTAHIHNPFECKICGKSFSLRHHLKSHINGVHDCIKPFACDICHKSFQRKETLQIHTTTVHDRIKPFKCEICRKSFGLKCGLKAHVNTVHDRIKSLNVKFVTSGTAVTKPSNLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -