Tpre007031.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1889-6679[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0013 0.021 14.8 1.3 1 23 531 554 531 554 0.94 2 12 8.6e-06 0.00014 21.6 0.1 1 23 560 583 560 583 0.97 3 12 8.1e-05 0.0013 18.5 0.9 1 23 589 612 589 612 0.95 4 12 5.4e-06 8.8e-05 22.2 0.6 1 23 618 641 618 641 0.97 5 12 1.9e-05 0.00032 20.5 0.5 1 23 647 670 647 670 0.94 6 12 0.00034 0.0056 16.6 3.7 1 23 677 700 677 700 0.92 7 12 0.0049 0.08 12.9 0.2 1 23 706 729 706 729 0.97 8 12 0.0014 0.022 14.7 1.1 1 23 735 758 735 758 0.91 9 12 0.0011 0.019 14.9 0.1 1 23 764 787 764 787 0.95 10 12 1.4e-05 0.00022 21.0 1.3 1 23 793 816 793 816 0.97 11 12 0.0007 0.011 15.6 3.5 1 23 822 845 822 845 0.96 12 12 3.4e-06 5.5e-05 22.9 3.3 1 23 851 874 851 874 0.96
Sequence Information
- Coding Sequence
- ATGGAAAGCAACGCCGGCGACTCGGCTGTGAGGGTAAAGAAAGAGCCGGACGATACTTCATCAAATGAAGATGACAATCACGTTTTCAATACGGTGGACATTaaaataCCTGCGGAAAAAAATGCAGCGTTACAAAAAAGggtcgataaaaatgtaattatagaTTTGGAGTGCCAAGATGTCAAAATTGAAAGTCCAGCTCTATCGACCAAAATCATAAAAACCGAGAATCAAAATTGTTCGCCtatagtaaaatttcaaagaaaaccGGCGGAAAAAAATGCAGCGTTACAAAAAAcggtcgataaaaatgtaattatagattttgagtgcCAAGATGTCAAAATTGAAAGTCCAGCTCTATCGACCAAAATCATTAAAACCGAAAATCAAAACAGTCCGCCTATggtaaaatttcagaaaaaacgCGTGAAAAGAAATGCAgcgttacaaaaaaagttaaataaagatgtgattatagattttgagtgccaagatgtcaaaattaaaagtcTGGCTCTATCGACGAAAATCATCAAAACCGAAAATCAAAACAGTCCGCCTATGgtgaaatttcagaaaaaacgcgtgaaaaaaaatgcagcgttacaaaaaaagttaaataaagatgtgattatagattttgagtgccaagatgtcaaaattaaaagtcTGGCTCTATCGACGAAAATCATCAAAaccgaaaatcaaaattgtcCGCCGATTGTGAAAGCAGAAAACGAAAATGTGACCAATtccgcgagagaaaaaagtctaataattttgatcaaaaaaGGGTATAATTATGACAGTAATTGTCAAATGAATGTCGAACCTCACGTAAAACTTGCCGAACCAGAGAGGCCAAGAAATCACGATAAAACTACTGCGCAAAAAACATGCGATTATTTAAGAATGTGTCAAAAAATGCTCACGGCTAGAGTATGTCTAAAAAGGCTTGTCcttaaaaaacgaaaaagcaTTTCACCGAGTAGGTGTGCAGTTAGCGAAGAATCATTTTCCTGCGAGGTCGAtccaaattttcattcaaacgaGGTAGAAAATCCCGTCGAACCTATGGATGATACGAATAAACAGATCAATACAAAACGAAAAAGCATTTCATCGAGTAGGTGTGCAGTTAGCGAAGAATCATTTTCCTGCGAGGTCGAtccaaattttcattcaaacgaGGTAGAAAGTCCCGTCGAACCTACGGATGATACGAATAAAAAGATCAATACAAAACGAAAAAGCATTTCACCGAGTAGGTGTGCTGTTAGCGAAGAATCATTTTCCTGCGAGAGCGACTCAAACGTTCATTCAAACGAGGTAGAAAATCCCGTCGAACTTACGAATGATACGAATAAAAAGAGGCTAAAAATTCTGATAAAAAAAGGTTATAATTACGATGATAATTGTTACATAAGCGTTAAATCCCGTATAGAACTTGCCGAAAATGAAGAGctacaaaattttgaacaaatcgctggaaaaaaattgcacaagtCAAAAATGAGTCTAAAATCTAATAAAGCAGGAACTAGTCAAAACaaatctgtaaataaaaattttaaaaacgcTAGAACGTACGATTGCTcagtttgtaaaaaatcatgttcCAGCAGTAGTGCCCGGCAAAAGCACATTCTTGCAGCACATAGTCGCGACAAACCTTTCGTATGCGACATTTGCGGGAAATCTTACTCGTACGCGGGTAGTCTCACTGTTCACGTCAATTCGGTACACGAGCGCACCCGAACGTACACATGCGATATCTGTTCCAAATCGTTCGGACTAAAAAGAAACCTCAGGTCTCAcataaattttgtacattcTCGTGTCAAgcctttcgaatgtgacatttgtcagaaatcattttcGTACAAAGGTACCCTCAGCAGTCACATAAGTACGGTACACGATGGGGTCAAATCCTTCGAGTGTAATATCTGTCACAAGACATTTTCGGGCAGGGGTAATCTCGTTCAACACGTGAACGCGGTacacgataataataaaaaactttttgagtGCGACGTATGCCAGAGGTCATTCAGTCACAGACGTAAACTTAGACGGCATAAAACTTTGGTGCACGATGGTAGAAAAATcttcgagtgtgacatttgtcggAAAAAACTTGGGTCAAAAAACGCCGTTCGAAATCACATAAGGGTAATACATAATGGCATCAAGcctttcgagtgtgaaatttgtcacaaatcattcggatTCGAGCGAACCTTGAATAATCACAGGGATGCAGTACACgatcgaagcaaacccttcgatTGTGAAATTTGTCGCAGATCACTTGCGAGCAAGGATGATCTCGAAAAACACGTAGAGAAAGAACATTTTCGAGACAAACCCTTCAAGTGTGACGTTTGTGGCAAGTCGTTCAGTCATCAAGAAGGACTTGACTCACACAAAAATTCTGTTCATGATCAGACACAATCCTTCGAGTgcaaaatttgtcataaatcatatttttataaaagttaccTCTATACTCATTTAGCCTCAGTACATTACCGTAATAAAGTATTCAAGTGCGAGATATGTAACAAGTCATTTAGCCGCAAGGATACTCTAAGAAATCACAACAATAGATTTCATAAGTAA
- Protein Sequence
- MESNAGDSAVRVKKEPDDTSSNEDDNHVFNTVDIKIPAEKNAALQKRVDKNVIIDLECQDVKIESPALSTKIIKTENQNCSPIVKFQRKPAEKNAALQKTVDKNVIIDFECQDVKIESPALSTKIIKTENQNSPPMVKFQKKRVKRNAALQKKLNKDVIIDFECQDVKIKSLALSTKIIKTENQNSPPMVKFQKKRVKKNAALQKKLNKDVIIDFECQDVKIKSLALSTKIIKTENQNCPPIVKAENENVTNSAREKSLIILIKKGYNYDSNCQMNVEPHVKLAEPERPRNHDKTTAQKTCDYLRMCQKMLTARVCLKRLVLKKRKSISPSRCAVSEESFSCEVDPNFHSNEVENPVEPMDDTNKQINTKRKSISSSRCAVSEESFSCEVDPNFHSNEVESPVEPTDDTNKKINTKRKSISPSRCAVSEESFSCESDSNVHSNEVENPVELTNDTNKKRLKILIKKGYNYDDNCYISVKSRIELAENEELQNFEQIAGKKLHKSKMSLKSNKAGTSQNKSVNKNFKNARTYDCSVCKKSCSSSSARQKHILAAHSRDKPFVCDICGKSYSYAGSLTVHVNSVHERTRTYTCDICSKSFGLKRNLRSHINFVHSRVKPFECDICQKSFSYKGTLSSHISTVHDGVKSFECNICHKTFSGRGNLVQHVNAVHDNNKKLFECDVCQRSFSHRRKLRRHKTLVHDGRKIFECDICRKKLGSKNAVRNHIRVIHNGIKPFECEICHKSFGFERTLNNHRDAVHDRSKPFDCEICRRSLASKDDLEKHVEKEHFRDKPFKCDVCGKSFSHQEGLDSHKNSVHDQTQSFECKICHKSYFYKSYLYTHLASVHYRNKVFKCEICNKSFSRKDTLRNHNNRFHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -