Tpre010733.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1494446-1496475[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.2e-05 0.0013 18.5 0.7 1 23 148 171 148 171 0.92 2 10 3.8e-05 0.00062 19.6 2.1 1 23 176 199 176 199 0.92 3 10 0.00021 0.0034 17.2 0.4 2 23 205 227 204 227 0.90 4 10 8e-07 1.3e-05 24.9 0.4 1 23 232 255 232 255 0.93 5 10 5.9e-05 0.00096 19.0 0.2 1 23 260 283 260 283 0.93 6 10 9.5e-05 0.0016 18.3 2.3 1 20 288 307 288 311 0.90 7 10 0.0017 0.029 14.4 0.7 2 23 317 339 317 339 0.92 8 10 5.3e-06 8.6e-05 22.3 0.6 1 23 344 367 344 367 0.91 9 10 9.2e-07 1.5e-05 24.7 0.6 2 23 373 394 373 394 0.96 10 10 1.9e-05 0.00031 20.5 0.2 3 21 401 419 400 420 0.93
Sequence Information
- Coding Sequence
- ATGGACTTCAGCGGTGTATATAACTCTGATGtcagGGTAAAGGAGGAACCAAATGATGTTTTCccaattgaaaatgatgattaTGAGATAATTGGCAATGCACACGATGCTAACACTGATGAATCCTCACGATGTCTAGAAAATTTTactCACGGGCCTAAAGATATCGAAATAGAATTCGAATGTAAGGACGAAAAGTCAAGCATTAACTTATTAGTGGTCAAAAAGATCGAGGACGATTATCCAGATCAGTTGCaacatatgaaaaatagttgcgATTATCagactcaaaagaaaattaaagaagaaattgtcgACGAAGTAAAAGAGGAATTGAATTTAGATGGTGAACTCAGTGATGCATTCGATGTAActgcaaaaatatttgctaaaaaaaaaatatgcgaaacCCGCACTGATAAGGCACACAATCCTGCGAAACATCAATGTAATAAATGtggtgaaaaatttacaataaaaagttATCTTGAAATGCACATCGATGCAGTTCATAATGACGTTAAGCATACATGTGTtacatgtggaaagacattcaaacACAAAGTTactctcaaaattcacatcgatgcgattcataatggtatggcacaAACATGCGAAgtatgcgggaagaaatttcaaacaaaGACTAAACTCAAGGTCCACGTCGATGCAGttcataatggtgttaaacatgcgtgtagtatatgtggaaaaacattcacacaaaaaggtgctctcaaaattcacatcaatGCTATGCATAATGGTATGACATTTACTTGTGaaatatgtgaaaagaaattcgcaACTGAGACTTCACTGAAGCTTCACATCgatgcagtacataatggtgttaaacatgaaTGTGgtatatgtggaaagacattcacacaaaaatgttatctcaaaatccacaacGATGCGAttcataatggtatggcaccAACATGCAAagtgtgcggaaagaaattcctAACTAAGACTAAACTCAAGATCCACATcgatggagtacataatggtgttaaacatgcgtgtgatatatgtgaaaagacattcacacaaaaaggaaatctcaaaatgcacatcgatgcgatgcataatggtatggcacctaAATGCgaaatatgtgaaaagacTTTCACACGAAAAGGAGATCTCAAGAGGCATATTGATGGACATAATGGTGTTGAAAATGCGTGTGGTAtgtgtggaaagacattctcacaaaaaagaaatctcaaaatccacgcgatgcgatgcataatggtgtgA
- Protein Sequence
- MDFSGVYNSDVRVKEEPNDVFPIENDDYEIIGNAHDANTDESSRCLENFTHGPKDIEIEFECKDEKSSINLLVVKKIEDDYPDQLQHMKNSCDYQTQKKIKEEIVDEVKEELNLDGELSDAFDVTAKIFAKKKICETRTDKAHNPAKHQCNKCGEKFTIKSYLEMHIDAVHNDVKHTCVTCGKTFKHKVTLKIHIDAIHNGMAQTCEVCGKKFQTKTKLKVHVDAVHNGVKHACSICGKTFTQKGALKIHINAMHNGMTFTCEICEKKFATETSLKLHIDAVHNGVKHECGICGKTFTQKCYLKIHNDAIHNGMAPTCKVCGKKFLTKTKLKIHIDGVHNGVKHACDICEKTFTQKGNLKMHIDAMHNGMAPKCEICEKTFTRKGDLKRHIDGHNGVENACGMCGKTFSQKRNLKIHAMRCIMV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -