Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:2119360-2121305[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.2e-06 5.3e-05 23.0 1.3 2 23 236 258 235 258 0.94

2 10 9.6e-08 1.6e-06 27.8 1.0 1 23 264 287 264 287 0.97

3 10 3.5e-05 0.00056 19.7 0.8 1 23 293 316 293 316 0.93

4 10 5.3e-07 8.7e-06 25.4 0.9 1 23 322 345 322 345 0.97

5 10 1.8e-06 3e-05 23.7 1.2 1 23 351 374 351 374 0.98

6 10 2.6e-05 0.00042 20.1 2.5 1 23 380 403 380 403 0.95

7 10 4e-06 6.6e-05 22.7 0.5 1 23 409 432 409 432 0.97

8 10 0.00013 0.0021 17.9 1.1 1 23 438 461 438 461 0.94

9 10 0.0001 0.0017 18.2 1.2 1 23 467 490 467 490 0.97

10 10 0.0067 0.11 12.5 3.8 1 23 495 518 495 518 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.2e-06	5.3e-05	23.0	1.3	2	23	236	258	235	258	0.94
2	10	9.6e-08	1.6e-06	27.8	1.0	1	23	264	287	264	287	0.97
3	10	3.5e-05	0.00056	19.7	0.8	1	23	293	316	293	316	0.93
4	10	5.3e-07	8.7e-06	25.4	0.9	1	23	322	345	322	345	0.97
5	10	1.8e-06	3e-05	23.7	1.2	1	23	351	374	351	374	0.98
6	10	2.6e-05	0.00042	20.1	2.5	1	23	380	403	380	403	0.95
7	10	4e-06	6.6e-05	22.7	0.5	1	23	409	432	409	432	0.97
8	10	0.00013	0.0021	17.9	1.1	1	23	438	461	438	461	0.94
9	10	0.0001	0.0017	18.2	1.2	1	23	467	490	467	490	0.97
10	10	0.0067	0.11	12.5	3.8	1	23	495	518	495	518	0.95

Sequence Information

Coding Sequence: ATGGAAAGCAGAAAGGATTTAGTTAGTGTTAAAGAGGAGCCTCGTGACGATTGGGAAGATGTAGCCAACGAGAGTGTCGATCCAGGGGTCTCGGTCAAAACCGAAAACTCTGATGAATCATCGgcaaatccCACCAATGACTGTATTTCGTCGCAGCAGAAGAAAGATGAGGATATTCTGATAGAATGCGAGAGCGTATTGGTAAAACATGAACCTAAGCCCTCATTGACGACCATCTGCCAAGCCACtgtaaaggaagaaaatcCAGCAAATGACTCGAGTGGAAAGAAGCctacaattttcattaaaaaagaatcCGATTGCGATAATAACCGTCAATTTACAATAGGAGAAGAATCGAGTTTAACAAGACAAATAGAAACGACGAATAAGGACGATGGATCACATGAATTAGAAATTTGCAAAACCGAAAACTCTGATGAATCATCGTCGAATGAGTCATCGGATgaaatttcgatcgaattGGAGACCGAGAATGTAAAACTTGAACCTAAGCCCTCATTAACGACCATTTGCCAAGCCACTGCAAAGGAAGAAAATCCAGCAAATGACTCGAATGGAAAGAagcttacaattttaattaaaaaaggattTGATTACGAGAAAAACCGTCAATTTACCACTGGAGAAGAATTGAGTTTAACAAGACAAATAGAAAAAACGAATAAGGACGATGGATCacttgaatgtaaaatttgtcataaatcgtTTAGATACCCAAGTCAACTCAAAATACACGTGAATcaagtacatgataaaaacaAACCCTTCCAGTGTGAGATttgtaataaatcatttggacaaaaaagtaatctcaagaAACAcgtaaattcagtacataatcagagcaaaccctttgagtgtgagatttgtcacaaatcatttggacaaaaatgggAGCTCACCACTCACACGAGTGCAGTACATTTaaggagcaaaccctttgagtgtgagataTGTAATAAATCATTTGCATACAAGAGTGATCTCAACAAACATACAACGACAGTACATGATcctagcaaaccctttgagtgtgagatttgtcacaaatcatttggacgaaaagattACCTCACTATACatgtaaatacagtacataatcggagcaaaccttttgagtgtgagatttgtcataaatcatttggatacaaaaatCATCTTAAAGTTCATCTAAATGCCGtccatgatcgtagcaaaccctttgagtgtgagatatgtaataaatcatttggacgaaaatggGAGCTCACCACTCACACGAGTACAGTACATTtgcggagcaaaccctttgagtgtgatatttgtcacaaatcatttggatacaaaatcAGCTTCGAAACGCATATGAGTGCAGTACATATGAgtagcaaacctttcgagtgtgatatttgtcacgaatcatttggataccagagtGTACTCAAATCTCACGTAAGATCAACTCATGAAcggagaaaatttgaatgtaagaCTTGTCACAGGTTATTTAGCGGCAAGAAGTGTCTCGAAAATCACATTAATGCAGTACATATGGAAAGCAAATCTtag
Protein Sequence: MESRKDLVSVKEEPRDDWEDVANESVDPGVSVKTENSDESSANPTNDCISSQQKKDEDILIECESVLVKHEPKPSLTTICQATVKEENPANDSSGKKPTIFIKKESDCDNNRQFTIGEESSLTRQIETTNKDDGSHELEICKTENSDESSSNESSDEISIELETENVKLEPKPSLTTICQATAKEENPANDSNGKKLTILIKKGFDYEKNRQFTTGEELSLTRQIEKTNKDDGSLECKICHKSFRYPSQLKIHVNQVHDKNKPFQCEICNKSFGQKSNLKKHVNSVHNQSKPFECEICHKSFGQKWELTTHTSAVHLRSKPFECEICNKSFAYKSDLNKHTTTVHDPSKPFECEICHKSFGRKDYLTIHVNTVHNRSKPFECEICHKSFGYKNHLKVHLNAVHDRSKPFECEICNKSFGRKWELTTHTSTVHLRSKPFECDICHKSFGYKISFETHMSAVHMSSKPFECDICHESFGYQSVLKSHVRSTHERRKFECKTCHRLFSGKKCLENHINAVHMESKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484997;
90% Identity: iTF_01484997;
80% Identity: iTF_01484997;