Tpre005966.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:977981-995466[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 9.2e-06 0.00015 21.5 1.1 2 23 657 679 656 679 0.94 2 10 0.00018 0.0029 17.5 0.7 1 23 685 708 685 708 0.97 3 10 2.3e-05 0.00037 20.3 0.2 1 23 714 737 714 737 0.96 4 10 8.9e-05 0.0015 18.4 3.2 1 23 743 766 743 766 0.95 5 10 7.9e-08 1.3e-06 28.0 0.9 1 23 772 795 772 795 0.97 6 10 5.4e-05 0.00087 19.1 0.2 1 23 801 824 801 824 0.94 7 10 1.9e-05 0.00031 20.5 1.2 1 23 830 853 830 853 0.97 8 10 2.8e-06 4.6e-05 23.1 1.5 1 23 859 882 859 882 0.94 9 10 1.4e-05 0.00022 21.0 1.2 2 23 889 911 888 911 0.94 10 10 7.6e-05 0.0012 18.6 0.7 1 23 917 940 917 940 0.97
Sequence Information
- Coding Sequence
- ATGGAAAGCAGGAAGGATTTAGTTAGTGTTGAAGGGGAGCCTCGCGACAATTGGGAAGATGTAGCCAACGAGAGTGTTGATCCGGGGATCTCGGTGAAAACTGAAATCTCTGAAGAATCATCGACGAATGAGTCATCAGATgaaatttcgatcgaattggagaccgaaaatgtaaaacttgaaCCTAAGCCCTCATTGACGACCATCTGCCAAGCTACTGTAAAGAAGGAAAATCCGGGGTTCTCGGTGAAAACTGAAAACACTGATGAATCATCGACGAGTGAATTATCGgctaATCCCACTATTGACTCTATGATGAAAGAGAAGCCTCGTGACAATTGCGAAGATGTAGCCGACGTGAGTGTGGATCCGGGGATCTCGGTGAAAACTGAAAACTCTGAAGAATCATCTTCGAATGAGTCATCGGATgaaatttcgatcgaattggagaccgaaaatgtaaaacttgaaCCTAAGCCCTCATCAACGAACATCTGCCAAACTAGTGTCAAGGAAGAAAATCCGGGGTTCTCGGGGAAAACTGAAAACTCTGATGAATCATCGACGAGTGAATCATCGgctaATCCCACTAATGACTCTATGATGAAAGAGGAGCCTCGTGACAATTGCGAAGATGTAGGCGACGTTAGTGTGCATCCGGGGATCTCGGTGAAAACTGAAAACTCTGAAGAATCATCTTCGAATGAGTCATCGGATgaaatttcgatcgaattggagaccgaaaatgtaaaacttgaaCCTAAGCCCTCATTGACGACCATCTGCCAAGCTACtgtaaaggaagaaaatcCGGGGTTCTCGGTGAAAACTGAAAACTCTGAAGAATCATCGTCGAATGAGTCATCGGATgaaatttcgatcgaattggagaccaaaaatgtaaaacttgaaCCTAAGCCCTCATTGACGACCATCTGCCAAGCTACTGTAAAGGAGGAAAATCCGGGGTTCTCGATGAAAACTGAAAACTCTGATGAATCATCGACGAGTGAATTATCGgctaATCTCACTAATGACTCTATGATGAAAGAGGAGCCTCGTGACAATTGCGAAGATGTAGCCGACGTTAGTGTGCATCCGGGGATCTCGGTGAAAACTGAAAACTCTGAAGAATCATCTTCGAATGAGTCATCGGATgaaatttcgatcgaattggagaccgaaaatgtaaaacttgaaCCTAAGCCCTCATTGACGACCATCTGCCAAGCTACTGTAAAGAAGGAAAATCCGGGGTTCTCGGTGAAAACTGAAAACACTGATGAATCATCGACGAGTGAATTATCGgcaaatccCACTAATGACTCTATGATGAAAGAGGAGCCTCGTGACAATTGCGAAGATGTAGCCGACGTGAGTGTTGATCCGGGGTTCTCGGTGAAAACTGAAAACTCTGATGAATCATCGATGAGTGAATCATCGGATgaaatttcgatcgaattggagaccgaaaatgtaaaacttgaaCCTAAGCCCTCATTGACGACCATCTGCCAAGCTACtgtaaaggaagaaaatcCGGGGTTCTCGGTGAAAACTGAGAACTCTGATGAATCATCGACGAGTGAATCATCGgctaATCCCACTAATGACTCTATGATGAAAGAGGAGCCTCGTGACAATTGCGAAGATGTAGCCGACGTGAGTGTGGATCCGGGGTTCTCGGTGAAAACTGAAAACTCTGAAGAATCATCTTCGAATGAGTCATCGGaagaaattttgattgaattggagaccgaaaatgtaaaacttgaaCCTAAGCCCTCATTGACGACCATCTGCCTAGCTACTGTTAAGGAAGAAAATCCAACAAATGACTTGAATGGGAAAAGgcttacaattttaattaaaaaaggattCAATTACGATAGTAATCGTAAATTTACCACAGAAGAAGCGACTTCAACGAGACAAATGAAAACGACACACAAGGGCAATGGACCacttgaatgtgaaatttgccatAAATCGTTTAGAAATCCAAGTAAACTTAAAGAGCACGTGAATcaagtacatgataaaatcaAACCTTTccagtgtgaaatttgtcacaaatcatttggatacaggGGTGGCGTCAAGCGTCACGTGaatgtagtacataatcagagcaaaccctttgagtgtgagtTTTGTGACAAagcatttggactaaaaagtGACCTTAAAAGACATATAAgtgtagtacataatcagagcaaatCCTTTGAGtgcgagatttgtcacaaatcatttggacataGAGGTCAGCTTAAAAATCACAGATATGTAGTACATTTGcaaagcaaaccctttgagtgcgagatttgtcaaaaatcattttcaagcAAGAGTAATCTCATTAGACACAGAAAAATAGTACATGATCAGAGCCAATCCTTTGAGTGTGAGTTTTGTGACAAagcatttggactaaaaagtGACCTTAAAAGACATAtaagtgcagtacataatcggagcaaaccctttgagtgtgatatttgtcaccagtcatttggatacaagggTGACCTCAAAAAGCACATAACAACAGTACATAAcggtagcaaaccctttgagtgtgatatttgtcacaaaacaTTTAGACTAAAAAGTGATCTTAAAAGACATAtaagtgcagtacataatcggagcaagccctccgagtgtgatatttgtcacaaatcatttggacgaaaaagtcATCTCGCAATTCATATTCAGGCAGTACACCTTCGGAGTAAATGCtttgagtgtgaaatttgtcacaaatcatttggataccctAGTGTACTCAAATCTCACGTAAAGTCAGCTCATGGacagagaaaatttgaatgttaG
- Protein Sequence
- MESRKDLVSVEGEPRDNWEDVANESVDPGISVKTEISEESSTNESSDEISIELETENVKLEPKPSLTTICQATVKKENPGFSVKTENTDESSTSELSANPTIDSMMKEKPRDNCEDVADVSVDPGISVKTENSEESSSNESSDEISIELETENVKLEPKPSSTNICQTSVKEENPGFSGKTENSDESSTSESSANPTNDSMMKEEPRDNCEDVGDVSVHPGISVKTENSEESSSNESSDEISIELETENVKLEPKPSLTTICQATVKEENPGFSVKTENSEESSSNESSDEISIELETKNVKLEPKPSLTTICQATVKEENPGFSMKTENSDESSTSELSANLTNDSMMKEEPRDNCEDVADVSVHPGISVKTENSEESSSNESSDEISIELETENVKLEPKPSLTTICQATVKKENPGFSVKTENTDESSTSELSANPTNDSMMKEEPRDNCEDVADVSVDPGFSVKTENSDESSMSESSDEISIELETENVKLEPKPSLTTICQATVKEENPGFSVKTENSDESSTSESSANPTNDSMMKEEPRDNCEDVADVSVDPGFSVKTENSEESSSNESSEEILIELETENVKLEPKPSLTTICLATVKEENPTNDLNGKRLTILIKKGFNYDSNRKFTTEEATSTRQMKTTHKGNGPLECEICHKSFRNPSKLKEHVNQVHDKIKPFQCEICHKSFGYRGGVKRHVNVVHNQSKPFECEFCDKAFGLKSDLKRHISVVHNQSKSFECEICHKSFGHRGQLKNHRYVVHLQSKPFECEICQKSFSSKSNLIRHRKIVHDQSQSFECEFCDKAFGLKSDLKRHISAVHNRSKPFECDICHQSFGYKGDLKKHITTVHNGSKPFECDICHKTFRLKSDLKRHISAVHNRSKPSECDICHKSFGRKSHLAIHIQAVHLRSKCFECEICHKSFGYPSVLKSHVKSAHGQRKFEC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -