Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:1050390-1053758[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0021 0.034 14.1 0.5 2 23 250 272 249 272 0.92

2 11 0.00032 0.0053 16.7 7.1 1 23 278 301 278 301 0.97

3 11 2.4e-06 4e-05 23.3 3.0 1 23 307 330 307 330 0.98

4 11 2.5e-07 4.1e-06 26.4 1.1 1 23 336 359 336 359 0.97

5 11 6.1e-08 1e-06 28.4 3.4 1 23 365 388 365 388 0.98

6 11 7.9e-06 0.00013 21.7 1.8 1 23 394 417 394 417 0.98

7 11 3.5e-05 0.00056 19.7 2.3 1 23 423 446 423 446 0.96

8 11 0.00039 0.0063 16.4 0.3 1 23 452 475 452 475 0.96

9 11 9.8e-06 0.00016 21.4 1.2 1 23 481 504 481 504 0.97

10 11 0.00068 0.011 15.6 2.9 1 23 510 533 510 533 0.92

11 11 0.00017 0.0028 17.5 0.3 1 23 539 562 539 562 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0021	0.034	14.1	0.5	2	23	250	272	249	272	0.92
2	11	0.00032	0.0053	16.7	7.1	1	23	278	301	278	301	0.97
3	11	2.4e-06	4e-05	23.3	3.0	1	23	307	330	307	330	0.98
4	11	2.5e-07	4.1e-06	26.4	1.1	1	23	336	359	336	359	0.97
5	11	6.1e-08	1e-06	28.4	3.4	1	23	365	388	365	388	0.98
6	11	7.9e-06	0.00013	21.7	1.8	1	23	394	417	394	417	0.98
7	11	3.5e-05	0.00056	19.7	2.3	1	23	423	446	423	446	0.96
8	11	0.00039	0.0063	16.4	0.3	1	23	452	475	452	475	0.96
9	11	9.8e-06	0.00016	21.4	1.2	1	23	481	504	481	504	0.97
10	11	0.00068	0.011	15.6	2.9	1	23	510	533	510	533	0.92
11	11	0.00017	0.0028	17.5	0.3	1	23	539	562	539	562	0.96

Sequence Information

Coding Sequence: ATGGAAAGCAGAAAGGATTTAGTTAGCATTAAAGAGGAGCCTCGTGACAATTGGGAAGATGTTGCCAACGAGAGTGTCGATCCGGGGGTCTCGGTCAAAACCGAAAACTCTGATGAATCATCGgcaaatccCACCAATGACTGTATTTCGTCGCAGCAGAAGAAAGATGAGGATATTCTGATAGATTGCGAGAGCGTATTGGTAAAACAGGAACATAAGCCCTCATTGACGACCATCTGCCAACCTACTGTAAAGGAAGAAGATCCGACAAATGACTCGAATGGAAAAAGgcttacaattttaaataaaaaaggatccGATTGCGATAATAACAGTCAATTTACGGTGGGAGAAGAATCGAGTTCAACAAGACAAATAGAAACGACGAATAAGGACGATGGATCACATGAATTAGAAATTTGCAAAACCGAAAACTCTGATGAATCATCGACGAATGAATCATCGgcaaatccCACCAATGACTGTATTTCGTCGCAGCAGAAGGAAGATGAGGATATTCTGATAGATTGCGAGAGCGTATTGGTAAAACAGGAACATAAGCCCTCATTGACGACCATCTGCCAACCTACtgtaaaggaagaaaatcCAGCAAATGACTCGAATGGAAAGAagcttacaattttaattaaaaaagacttCAATTACGATAGTAATCGTAAATTTACCAGAGAAGAAGCAACTTCAGCCCGACAAAAGAAAACGACACGCAAGGGCAGTAGACCacttgaatgtgaaatttgtcacaaatcgtttAGATACCCATCTATTCTTAAAGGGCACGTGAATcaagtacatgataaaaacaAACCCTTCCAGTGtaacatttgtcacaaatcattttcatgcaAGCGTAATCTAAATAGACATACAAGCACAGTACacgatcgtagcaaaccttttgagtgtgagatttgtcacaaatcatttggacaaaaagatCACCTCACTACACatgtaaatacagtacataatcggagcaaactctttgagtgtgagatttgtcataaatcatttgcagAAAAAGGTAACCTGAATAAACACAtgaattcagtacataatcggagcaaaccctttcagtgtaacatttgtcacaaatcattttcaaacaaGGGTGATCTAAATAAACATacaaggacagtacacgatcgtagcaaaccttttgagtgtgagatttgtcacaaatcatttggacaaaaaaataccCTCACTACACatgtaaatacagtacataatcggagcaaaccttttgagtgtgagatttgtcacaaatcatttggactaaaaggtCACCTCACTAAACATTTAAATGAAGTACATTTGCGGAggaaaccctttgagtgtgacatttgtaaaaaatcatttgcagCAAAAGGTAACCtcacatttcacataaattcagtacataatcagagcaaaccctttgagtgtgagatttgtcacaaatcatttgcagAAAAAACTAAGCTCACTAGACATGTAAATATAGTACATTATCagagcaaaccttttgagtgtgagatttgtcacaaatcatttggacttaAACAACACCTCAAATCTCACACGAGTGCAGTACATTTGCGGAGGAAGccctttgagtgtgacatttgtcaaaaatcatttgcagaAAAAGGTAACCtcacatttcacataaattcagtacataatcagagcaaacccaTGTGA
Protein Sequence: MESRKDLVSIKEEPRDNWEDVANESVDPGVSVKTENSDESSANPTNDCISSQQKKDEDILIDCESVLVKQEHKPSLTTICQPTVKEEDPTNDSNGKRLTILNKKGSDCDNNSQFTVGEESSSTRQIETTNKDDGSHELEICKTENSDESSTNESSANPTNDCISSQQKEDEDILIDCESVLVKQEHKPSLTTICQPTVKEENPANDSNGKKLTILIKKDFNYDSNRKFTREEATSARQKKTTRKGSRPLECEICHKSFRYPSILKGHVNQVHDKNKPFQCNICHKSFSCKRNLNRHTSTVHDRSKPFECEICHKSFGQKDHLTTHVNTVHNRSKLFECEICHKSFAEKGNLNKHMNSVHNRSKPFQCNICHKSFSNKGDLNKHTRTVHDRSKPFECEICHKSFGQKNTLTTHVNTVHNRSKPFECEICHKSFGLKGHLTKHLNEVHLRRKPFECDICKKSFAAKGNLTFHINSVHNQSKPFECEICHKSFAEKTKLTRHVNIVHYQSKPFECEICHKSFGLKQHLKSHTSAVHLRRKPFECDICQKSFAEKGNLTFHINSVHNQSKPM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -