Tpre009942.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:4477366-4479543[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.12 1.9 8.6 0.1 5 23 153 172 152 172 0.94 2 12 0.0014 0.022 14.7 0.8 2 23 179 201 179 201 0.95 3 12 5.7e-05 0.00093 19.0 2.8 1 23 207 230 207 230 0.95 4 12 8.1e-05 0.0013 18.6 1.5 2 23 237 259 236 259 0.94 5 12 0.00071 0.012 15.6 0.9 2 23 266 288 265 288 0.94 6 12 2.7e-06 4.4e-05 23.2 1.8 2 23 295 317 294 317 0.96 7 12 1.3e-05 0.00021 21.1 1.5 1 23 323 346 323 346 0.97 8 12 3.3e-05 0.00054 19.8 1.6 1 23 352 375 352 375 0.96 9 12 1.2e-06 2e-05 24.3 1.7 2 23 382 404 381 404 0.96 10 12 8.7e-07 1.4e-05 24.7 0.5 1 23 410 433 410 433 0.98 11 12 0.00019 0.0031 17.4 1.6 1 23 439 462 439 462 0.98 12 12 4.8e-06 7.8e-05 22.4 1.7 1 23 468 491 468 491 0.96
Sequence Information
- Coding Sequence
- ATGGATGCAAAACAGGATACAGTTaggataaaaaaagaacctAATGATAGTTGGTCAGATGTAGACAACGAAGATAATTTTGATTCAGTGGACTCGTTCAAAACCGAAAAATTTCCGTTTTATAAATTAGCAGCCAACAAGATAAAGGAAGGTACGTCTAAATACGAAAAatcagatgaaaaaatatttatagattttgagtgTAAAGATGTGAAACCTGAAACGAGGTCTTCATCGACCACCATCTGCAAATCTGAGGATAAAAATGACTTAcctattgtgaaaatagaaaaccaaATTCAGACAAATtacttaaatgaaaaaaaggtcataattttaattaaaaaaggatttaattACGATAACAACTATCGATTTCAAGAAATTGATCAATTGAAGCTTGATGAATCcgataaagtaaaaatatttaaaaaaagaactgaAACTAAATTATCTTTgtgcagaaaaatttataaaggaAAAGTGAGTCTACAAGCACATATTGATACAACACATAAGAACATTAGACCACgtgagtgtgagatttgtcacaaatcatttccCTACCAACAAGACCGCAAAAGTCACGTAAATGTTGTtcatgatcgtatcaaacccttcgattgtgatatttgtcacaaatcatttggatacaagaatcacctcaaaactcacattgatatagtacataatcgaagcaaacccGTTGAGTGTggaatttgtcacaaatcatttggatacaagaatcacctcaaaactcacattgatatagtacataatcgaagcaaacccGTTGAGTGTggaatttgtcacaaatcatttggataccggAACACACTCAAGAGCCACAAATTAATAGCTCATAATCTTGGCATTCCTAtcaaatgtgaaatttgtcacaaatcatttagagTAAAACAGAacctcaaaaatcatattgatacagtacataatcgaagcaaaccttttcagtgtaaaatttgttataaagcatttggacaaaaagttcACCTTAACACTCACATAGATACAGTTCATGATCGCAGCAAATCTTTTCAGTGTGAAATTtgccataaatcatttggatatcagaATGAACTCAAAAGCCACAAATTAATAGCTCATAATCTTGGCATTCCTAtcaaatgtgaaatttgtcacaaatcatttgtatACCAGAGCCaactcaaatctcacattacTACAGTGCATGATCAGATCAAGCCCTTtcaatgtgacatttgtcaaaaatcatttggagaaaagggttccctcaaaagacacataaatacagtacacatTCGAaataaacccttcgaatgtaagatttgtcaaAAGTCATATGGGCGTAAGGATACTCTCAAATttcacataaagacagtacataaTAGAAggaaacccttcgaatgtgacatttgtcacaaatcatttggataccaaaGTTATCTTAAATCTCACATAAACTTAGAGCATGATTGTGGTAAGTTCTAG
- Protein Sequence
- MDAKQDTVRIKKEPNDSWSDVDNEDNFDSVDSFKTEKFPFYKLAANKIKEGTSKYEKSDEKIFIDFECKDVKPETRSSSTTICKSEDKNDLPIVKIENQIQTNYLNEKKVIILIKKGFNYDNNYRFQEIDQLKLDESDKVKIFKKRTETKLSLCRKIYKGKVSLQAHIDTTHKNIRPRECEICHKSFPYQQDRKSHVNVVHDRIKPFDCDICHKSFGYKNHLKTHIDIVHNRSKPVECGICHKSFGYKNHLKTHIDIVHNRSKPVECGICHKSFGYRNTLKSHKLIAHNLGIPIKCEICHKSFRVKQNLKNHIDTVHNRSKPFQCKICYKAFGQKVHLNTHIDTVHDRSKSFQCEICHKSFGYQNELKSHKLIAHNLGIPIKCEICHKSFVYQSQLKSHITTVHDQIKPFQCDICQKSFGEKGSLKRHINTVHIRNKPFECKICQKSYGRKDTLKFHIKTVHNRRKPFECDICHKSFGYQSYLKSHINLEHDCGKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484979;
- 90% Identity
- iTF_01484979;
- 80% Identity
- iTF_01484979;