Tpre004801.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:469208-471585[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0052 0.084 12.9 0.5 3 20 177 194 175 198 0.89 2 13 3.1e-06 5.1e-05 23.0 1.2 1 23 203 226 203 226 0.94 3 13 0.0015 0.025 14.5 0.7 3 20 236 253 234 257 0.89 4 13 2.4e-05 0.00039 20.2 2.3 1 23 262 285 262 285 0.96 5 13 0.005 0.082 12.9 0.5 3 20 295 312 293 316 0.89 6 13 5.2e-06 8.5e-05 22.3 3.5 1 23 321 344 321 344 0.96 7 13 2.8e-05 0.00046 20.0 0.2 1 23 349 372 349 372 0.95 8 13 9.8e-05 0.0016 18.3 2.2 1 23 377 400 377 400 0.94 9 13 6.7e-05 0.0011 18.8 0.1 1 23 405 428 405 428 0.96 10 13 3.5e-06 5.7e-05 22.8 3.7 1 23 433 456 433 456 0.95 11 13 4.4e-05 0.00071 19.4 1.7 1 23 461 484 461 484 0.92 12 13 1.2e-05 0.00019 21.2 3.1 1 23 489 512 489 512 0.94 13 13 0.88 14 5.9 0.1 5 20 521 536 520 538 0.90
Sequence Information
- Coding Sequence
- ATGGAATCGAGCGATACATTCAGCTGTGCTGTTAgagTAAAACAGGAACCAATTGATATGTCGCTAGATGATAATGAAGATAATCAAACAATTGACAAGGCCCCTGAAGttcaaaatgttgaattttccCAATTGATGCATGGAAATACAGTAAGAGTTGATAATTTTGTGATCCAAAGGCTTAAACAAGAGTATGATGAAACAGCTGATCCTCATGACGACatggaaataattttcgagTGTAAAGATGTAAAGCCCGACACGGGTTTATTACTACTTAAGAAAATGGAGGATTCttctgaaaattatttgcagAATATGATATTCAACGATCAAActcaaaaaacaataaaagtagaaaatgcTGGGGTAGTAAAAGAAGAATTTGTTAAtgaagaagcagaaaaattgattatgaATTCCGATTGCGAACTCAGTAAGCAAAATGATAAGAGAAGAGTTGAAGAAACATCAATCTTTAAACATAGACTCAAAACATCCATCGATAAAGTGAATAGTAGAATCATTTGTGATACATGtggattgaaatttaaaacaaaacttgGTCTCAAACGCCACAACGACGGGAAACATAAGGGTATAAGACATGCATGTAATGAGTGCAAAAAGTCATTTATCCAAAAAAGTTCCCTCAAAATCCATATCGAAAGTGTGCACACTGATAAAGTGAATAGTAGTATCATTTGTGATACATGtggattgaaatttaaaacaaaatttggtCTCAAACGCCACAACGACGCGAAACATAAGGGTATAAGACATGCATGTAATGAGTGTGGAAACTCATTCTCACAGAGATTTCATCTTAAAATCCACATTGAAACGGTGCACACTGATAAAGTGAATAGTAGTATCATTTGTGATACATGtggattgaaatttaaaacaaaacttgGTCTCAAACGCCACAACGACGCGAAACATAATGGTATAAGACATGCATGTAATGAGTGTGAAAAATCATTCACTCGCAAATTTCATCTTAAAATCCACATTGAAACAGTGCACAATGGTTTTAgatatgcatgtgatatttgcgggaAGAACTTCACAACGAAAAGTATTCTCAGAACCCATATCGactcggtgcataatggtatatCTCATGCATGTAATGAgtgcgaaaaatcatttacCCATAAAAGGCCCCTCACAATCCACATGGAAAATGTGCACAATGGTATCAgatatgcatgtgatatttgcgggaAGAACTTCACAACGAAAGGTATTCTCAGAACCCATATCGagtcggtgcataatggtgtatCTCATGCATGTAATGAGTGTGAAAAATCATTCACACAGAGATCTCATCTTAAAACCCACATTGAAAAggtgcacaatggtgttaCACATGCATGTAATCAATGCAGAAGATCATattcacaaaaaagtaatctcaaaattcacatcgataaTGTGCATAATGGTATATCTCATGCATGTAATGAGTGCAAAAAGTCATTTAGCCGTAAAAGGACCCTAAAAATGCACATGGAAAatgtgcacaatggtgtcaaatATGCATCTAGTGAGTGCGAAAAGTCatttaccaaaaaaagaaTCCTCAAAATCCACATAGATAAGGACAAGACACAATAG
- Protein Sequence
- MESSDTFSCAVRVKQEPIDMSLDDNEDNQTIDKAPEVQNVEFSQLMHGNTVRVDNFVIQRLKQEYDETADPHDDMEIIFECKDVKPDTGLLLLKKMEDSSENYLQNMIFNDQTQKTIKVENAGVVKEEFVNEEAEKLIMNSDCELSKQNDKRRVEETSIFKHRLKTSIDKVNSRIICDTCGLKFKTKLGLKRHNDGKHKGIRHACNECKKSFIQKSSLKIHIESVHTDKVNSSIICDTCGLKFKTKFGLKRHNDAKHKGIRHACNECGNSFSQRFHLKIHIETVHTDKVNSSIICDTCGLKFKTKLGLKRHNDAKHNGIRHACNECEKSFTRKFHLKIHIETVHNGFRYACDICGKNFTTKSILRTHIDSVHNGISHACNECEKSFTHKRPLTIHMENVHNGIRYACDICGKNFTTKGILRTHIESVHNGVSHACNECEKSFTQRSHLKTHIEKVHNGVTHACNQCRRSYSQKSNLKIHIDNVHNGISHACNECKKSFSRKRTLKMHMENVHNGVKYASSECEKSFTKKRILKIHIDKDKTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -