Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:726066-728325[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.8e-06 7.8e-05 22.4 2.3 1 23 228 251 228 251 0.96

2 14 0.00013 0.0021 17.9 1.8 1 23 257 280 257 280 0.95

3 14 0.00016 0.0026 17.6 0.7 1 23 286 309 286 309 0.97

4 14 2.2e-06 3.6e-05 23.5 1.4 1 23 315 338 315 338 0.97

5 14 0.00029 0.0048 16.8 0.3 1 23 344 367 344 367 0.94

6 14 0.015 0.24 11.4 4.0 1 23 373 396 373 396 0.94

7 14 0.00035 0.0057 16.6 0.8 1 23 402 425 402 425 0.92

8 14 0.0018 0.029 14.3 0.1 2 23 432 454 431 454 0.95

9 14 0.012 0.2 11.7 0.3 1 23 460 483 460 483 0.96

10 14 8.5e-05 0.0014 18.5 5.4 1 23 488 511 488 511 0.96

11 14 0.0077 0.13 12.3 6.1 1 19 517 535 517 546 0.95

12 14 3.1e-05 0.00051 19.8 0.7 1 23 551 574 551 574 0.93

13 14 4.8e-05 0.00078 19.3 2.2 1 23 580 603 580 603 0.96

14 14 0.00018 0.003 17.4 1.5 1 23 609 632 609 632 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.8e-06	7.8e-05	22.4	2.3	1	23	228	251	228	251	0.96
2	14	0.00013	0.0021	17.9	1.8	1	23	257	280	257	280	0.95
3	14	0.00016	0.0026	17.6	0.7	1	23	286	309	286	309	0.97
4	14	2.2e-06	3.6e-05	23.5	1.4	1	23	315	338	315	338	0.97
5	14	0.00029	0.0048	16.8	0.3	1	23	344	367	344	367	0.94
6	14	0.015	0.24	11.4	4.0	1	23	373	396	373	396	0.94
7	14	0.00035	0.0057	16.6	0.8	1	23	402	425	402	425	0.92
8	14	0.0018	0.029	14.3	0.1	2	23	432	454	431	454	0.95
9	14	0.012	0.2	11.7	0.3	1	23	460	483	460	483	0.96
10	14	8.5e-05	0.0014	18.5	5.4	1	23	488	511	488	511	0.96
11	14	0.0077	0.13	12.3	6.1	1	19	517	535	517	546	0.95
12	14	3.1e-05	0.00051	19.8	0.7	1	23	551	574	551	574	0.93
13	14	4.8e-05	0.00078	19.3	2.2	1	23	580	603	580	603	0.96
14	14	0.00018	0.003	17.4	1.5	1	23	609	632	609	632	0.96

Sequence Information

Coding Sequence: ATGAAAAGCAAAAGgGTGAAGAAAGAGCCGCTCGATAACGTCCCTGATGCAGGTGACAGTTGTAACTCCGATTCAGTGGACTCTTGTAAAGCcaaaaatgttgaaacttTGACGTACGATGGATTATCGGTGaaacaagagaaagagactgtGGCGCTACAGGAAAATTCAGAGGTACAAATTTctattgattttgaatgctGCGATGTTAAACAAGAATTAAAGTCATTGTCGACTATTACCTGCAAAACTGAGCATCAAAGTGACTTACCTTGTGTGAaaacagaaaatgaaaatcagaccAATGAcacacatgaaaaaatatttatagattttgagtgcagaGAAGTAAAAGTTGAAATGAAGCCTTTATCAAGAAACATCTGCAAAACCGAGAATCAAAGTTGTCAATCTGTTGAAAACATAGATAACGAAGTTCAGCAAAATTACTTGCATGGAAAGAGTCTTATAATTCGTATAAGAAAAGGATATGATTACCATAATAACTGTCAATTTCAAGAAAAGTTCCGTTTGAAGCTTAACGAATGCGAGACCGAAAAGGAGGTAAAAATAGTGAACCAAACCACATTATCGAATAAGAAAACTTTACGTAAAAGAACTAATAAAGAGGGAGCAAGTTTGAAAACACGTGTTATTAAGACACACAAATCTgatagaaaatttgaatgtaacatttgttacaaatcatttggaaacaACAGTCATCTCAAAAGGCACGTGAATCAAGTACATGAGctgagcaaaccctttgagtgtgacatttgtcacaaatcatttccAGAAAAACATAGGcttaaaattcacataaatggAGTACATGGTCGgaacaaaccctttgagtgtgtcATTTGTCGCGAATCATTTGGATACGTAAGTCATCTTAGAACTCATATGATAACTGTTCACGATCGTAGCAAATTCtttgagtgtgacatttgtcatagatcatttggacaaaagagCGACCTCAATAAACATGTaagtacagtacataatcgaagcaaacctttcgagtgtgacatttgtcacagaTTATTTGGAACAAAAAGTCCCCTCAACAGACACATAATTGCAGtgcataatcgtagcaaaccttatgaatgtaagatttgtcacaaatcatttggacacaaaCATATCCTCGATTCTCACATAATTATCACGCATGATCTCAGCAAAGCATTtgagtgtaaaatttgtcacaaattatttggaagAAAAGATGGACTTAAAACTCACGTAGAGGGAGTACATAATCGCAGCAAACTCTtagaatgtgaaatttgtcgcaAATCACTTGGAAACAAAAATAGCCTCAAATCTCATATAGAAGTAGTgcataatcataaaaaaccctttgaatgtgacatttgtggCAAGTTATATGCATCAAAACAACGCGTTAAATATCATATAATTTCTATGCATAATGGTAGCAaattcgaatgtaaaatttgtcataaatcatttgtacACAAAAGAACCCTCAATTATCACATCAATCTCACGCATGATCGGAGCAAAgcatttcaatgtaaaatttgccACAGACCATTTGGACACAACGATGCGCTCAAGAAGCACGGTGatctcaaaaagcacattGAGATGATACATATACGTAAAACCTTTAAATGTAAGAtctgtcaaaaatcattttcatccaAGGCTTACGTTACTATTCACATTGATGCCACACATAATGGTAACAAACCAcacgagtgtgaaatttgtcgaAAATCATTTGGCCATAAAGAAAGCCTTAGAAACCACATAGTTACAATTCATAATGGTAAAAGACCCTTCGattgtgagatttgtcacaaagcATTTACATTAAGAGCGCGCCTGAAAAGACACGTCAGACAAGTacacaatagaaaaaaagtgtag
Protein Sequence: MKSKRVKKEPLDNVPDAGDSCNSDSVDSCKAKNVETLTYDGLSVKQEKETVALQENSEVQISIDFECCDVKQELKSLSTITCKTEHQSDLPCVKTENENQTNDTHEKIFIDFECREVKVEMKPLSRNICKTENQSCQSVENIDNEVQQNYLHGKSLIIRIRKGYDYHNNCQFQEKFRLKLNECETEKEVKIVNQTTLSNKKTLRKRTNKEGASLKTRVIKTHKSDRKFECNICYKSFGNNSHLKRHVNQVHELSKPFECDICHKSFPEKHRLKIHINGVHGRNKPFECVICRESFGYVSHLRTHMITVHDRSKFFECDICHRSFGQKSDLNKHVSTVHNRSKPFECDICHRLFGTKSPLNRHIIAVHNRSKPYECKICHKSFGHKHILDSHIIITHDLSKAFECKICHKLFGRKDGLKTHVEGVHNRSKLLECEICRKSLGNKNSLKSHIEVVHNHKKPFECDICGKLYASKQRVKYHIISMHNGSKFECKICHKSFVHKRTLNYHINLTHDRSKAFQCKICHRPFGHNDALKKHGDLKKHIEMIHIRKTFKCKICQKSFSSKAYVTIHIDATHNGNKPHECEICRKSFGHKESLRNHIVTIHNGKRPFDCEICHKAFTLRARLKRHVRQVHNRKKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -