Tpre011911.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:258713-260550[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5e-05 0.00081 19.2 0.2 1 23 159 182 159 182 0.96 2 13 2.9e-05 0.00047 20.0 1.6 1 23 187 210 187 210 0.91 3 13 7.6e-05 0.0012 18.6 0.5 2 23 216 238 216 238 0.92 4 13 0.0043 0.07 13.1 2.5 1 23 243 266 243 266 0.90 5 13 1.3e-05 0.00021 21.1 0.2 2 23 272 294 272 294 0.92 6 13 0.00056 0.0092 15.9 0.4 1 23 299 322 299 322 0.91 7 13 2.9e-05 0.00047 20.0 0.2 2 23 328 350 327 350 0.92 8 13 1.9e-05 0.0003 20.6 1.2 1 23 355 378 355 378 0.93 9 13 0.0015 0.025 14.5 0.7 2 23 384 406 384 406 0.92 10 13 1.9e-05 0.0003 20.6 1.2 1 23 411 434 411 434 0.93 11 13 0.00012 0.002 18.0 0.7 2 23 440 462 440 462 0.97 12 13 4.6e-05 0.00076 19.3 2.7 1 23 467 490 467 490 0.97 13 13 0.0014 0.022 14.7 6.7 1 23 495 518 495 518 0.94
Sequence Information
- Coding Sequence
- ATGGACTTCAGTGATTTATATAACTCtgatgtcagAGTGAAGAAGGAACCTAATGATGTTTCCccaattgaaaatgaagattatatgaaaattgacaatgCACGTAATGCTAAAACCGACGAATTCTCGAGtttttgtcgagaaaatttaATTTATGGGCTgcgtaaaaatgatgaaaattccGGACCTAATAACGATTTGGAAATAGAATTCGAATGTAAGGACGAGAAGCTCAGCATTGACTTATTAGTAGTCAAGAAAACCGAGGACGATTATCCAGATCAATGGCagcatatgaaaaatagttgcgATTATCagactcaaaagaaaattaaagaagaaattgtcgACGAAGTAAAAGAGGAATTGAATTTGGATGGTGAACTCAGTGATGCATTTGATGGAAATGGaaaaacatttgctcaaaATAGTCAACGCAAAACCCAAACTGATAAGGCACGCAATCGTACCAAAtatccatgtaatatatgcagtaaaaaatttgcactaAAAGATTATCTCAaggtccacatcgattcagtacataatggtgttaaacatgcgtgtggtaattgtggaaagacattcaaacACAAAGGTactctcaaaattcacatcgatgcgatgcataatggtatggcacctacttgcgaaatgtgcggaaagaaatttcaaacgaaggATAAACTCAAGATCCATATcgatggagtacataatggtgttaaacacgCGTGTGGTACTTGTGCAAAGACTTTCacacaaaaatgttatctcaagattcacatcgatgcgatgcataatgacATGGCCCCTACTTGtgaaatatgcggaaagaaatttccaACGAAGGATAAACTCAAGATCCATATcgatggagtacataatggtgttaaacatgcgtgtggtaCATGTGAAAAGATATTCACACAAAAATGgtatctcaaaattcacatcgatgcgatgcataatggtatggcactTACTTGCGAagtatgcggaaagaaattcgcaTTCAAGAGTGGTCTCAAACTCCACATGGATGCAGTGCATAATAAGATAACTCACGCATGTGATACATGTGGCAAAATATTTACGATGAAAGATACTCTCAAGAAACACATCAATGCGACACATAAAggtatggcacctacttgcgaagtgtgcggaaagaaattcgtaTTGAAGTGTGGTCTCAAACTCCACATGGATGCAGTGCATAATAAGATAACTCACGCATGTGATACATGTGGCAAAATATTTACGATGAAAGATACTCTCAAGAAACACATCAATGCGACACATAAAggtatggcacctacttgcgaagtgTGCAGAAAGAAATTCGCATTCAAGAGTGGTCTCAAACTCCACATGGATACAGTGCATAATAAGATAACTTACGCATGTAATACGTGTGGCaagaaattttctaaaaaacatCGTCTTATAAGTCACATTGAAACGCAGCACGAAGACATTGATCACGCTTGTGTtttatgcggaaaaaaatttaaacatagaaaatatttatgcagacACGTCCAAAGTGTGCATGAAGGCAATACCCAAGCACGAGATCAATACAAATGA
- Protein Sequence
- MDFSDLYNSDVRVKKEPNDVSPIENEDYMKIDNARNAKTDEFSSFCRENLIYGLRKNDENSGPNNDLEIEFECKDEKLSIDLLVVKKTEDDYPDQWQHMKNSCDYQTQKKIKEEIVDEVKEELNLDGELSDAFDGNGKTFAQNSQRKTQTDKARNRTKYPCNICSKKFALKDYLKVHIDSVHNGVKHACGNCGKTFKHKGTLKIHIDAMHNGMAPTCEMCGKKFQTKDKLKIHIDGVHNGVKHACGTCAKTFTQKCYLKIHIDAMHNDMAPTCEICGKKFPTKDKLKIHIDGVHNGVKHACGTCEKIFTQKWYLKIHIDAMHNGMALTCEVCGKKFAFKSGLKLHMDAVHNKITHACDTCGKIFTMKDTLKKHINATHKGMAPTCEVCGKKFVLKCGLKLHMDAVHNKITHACDTCGKIFTMKDTLKKHINATHKGMAPTCEVCRKKFAFKSGLKLHMDTVHNKITYACNTCGKKFSKKHRLISHIETQHEDIDHACVLCGKKFKHRKYLCRHVQSVHEGNTQARDQYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -