Tpre000231.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:250384-253101[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.5e-05 0.00041 20.1 0.8 1 23 216 239 216 239 0.97 2 15 0.0046 0.075 13.0 0.7 1 21 244 264 244 265 0.94 3 15 0.06 0.97 9.5 0.4 3 23 275 296 274 296 0.96 4 15 0.00012 0.002 18.0 2.5 1 23 301 324 301 324 0.94 5 15 0.00087 0.014 15.3 1.6 1 23 329 352 329 352 0.94 6 15 0.001 0.017 15.1 1.7 1 21 357 377 357 380 0.88 7 15 5.1e-05 0.00083 19.2 0.4 2 23 386 408 386 408 0.94 8 15 1.8e-05 0.00029 20.6 1.9 1 23 413 436 413 436 0.94 9 15 0.0016 0.027 14.4 3.3 1 23 441 464 441 464 0.92 10 15 0.0011 0.017 15.0 0.2 1 23 469 492 469 492 0.95 11 15 2.7e-06 4.3e-05 23.2 0.1 2 23 526 548 525 548 0.94 12 15 1.4e-05 0.00022 21.0 0.7 1 23 603 626 603 626 0.95 13 15 0.00014 0.0023 17.8 0.3 3 23 632 653 631 653 0.97 14 15 0.081 1.3 9.1 1.9 1 23 656 679 656 679 0.89 15 15 0.021 0.35 10.9 0.4 1 23 707 730 707 730 0.88
Sequence Information
- Coding Sequence
- ATGAATCTTAATTCATCTTCGCCAGGATCATCATTCGCCGCCAGAATAAAGCGTGAGCCTAGTTGCTCGAATGATGACACATCTAAAAATTCTCAAGAAAGCACCAATGATGACAATCTTGGGCGACGGTCTGATGATAGACATGAAGCAACGCAGAATCTTTTTAATGAAGATGGCAATGAATTTATCATAGAATTCGAGTGCAAAACTGAATTTGTTGGAAACgatcttataaaaaaagaacctCCAGTTGCAATGCAAAAAGAATCTTCTAAAAATCGAAACAGGAAGTCAATGATTGATCGTGAGCGACGgtctaaaaataaacttgtaaCGACCCAGAATCTTTTTGACAAAGAAGTTAGCATAAATTTTGCGTGCAAAACAGAAACAGAATCCAATCCGAATCATATACTAACTAAAAAAGTTCGTGATCGACCTAATCATTCCTTAAGAAAAGGCCAAATAGAGATAAATGTTGGAACTCGAAATGGAAAGTCAAACACGAATTTTGATGATGTGcttaacaaaataaataagaaaataaaaaatcccaAAAGAAAATCCGTCGATGTTCGCATGACGCAAGTGGCGAAAAAGAGCCTGAAGCCAAATACCAAGAAAGCAGTTAAAAAACGTAATAATTATTCGTGTAATTCGTgtgaaaaaacatttacaaCCAACGAGGGTCTTAAAGCACATGTAAATTCGAAACATAAAGGGGTGACTTACGTGTGTTTTGTATGCGGAAAGGGGATCACATCACATTACCATCTCGAAGCTCACAAACAATCGGTGAACGTTGGCAAGCGCACGCGTGCATGCGATTCCTGCGATAAGAAGTTTGCAACCAGGACTTATCCCATGAGACATGTTCGTTctgtgcacaatggtgtcgAACATGCATGCAATGTGTGCGGGAAGAAGtataaatttaagaaaaaccTCAAATTACACATCGACTCGATGCATCGAAAAAACGAACACgtgtgtgatatttgcgggaaaaaatttttacagaaacaCAGTCTCAAAATCCACGTCAATGCGGTGCACAAACGTGTCAGACATGCATGCGATGTGTgcggtaaaaaatataaatataagggCTCCCTCAAAGTTCATAAAGATTTTGAGCACAAAAAAATCGCACGTGTGTGTGATTTTTGCAAGAAggaattttcacaaaaaagcCTGCTCATAAACCACATCAATGCCGagcacaatggtgtcaaacATGCATGCAGTGAGTGCGGAAAGAAGTATAAATTTAAGAGTAACCTTAAAATCCATATAGATTCGATGCACAGAAAAATCGAACACgcgtgtgatatttgcgggaAGAAGTACACATCAAAGAGTATGCTCGGACATCATAAAGATTCGAAGCACAGAAAATTCACATACACGTGCGATATTTGCGGGAAGGAATTTAAGTGGAAGACTTCTATTATTAAGCATATCAAAGCGGCGCATGCGGGTATCACACGTAATTCACAAAAGCAGACATCAAAATGCAAGGGTAAGCTCAAAGTCCACAAGGACTCGTCGGTGCATGATGGTGTCACCCAGAGCTCATGTGgtatttgcggaaagacattcgcACGCAAGGCACAGCTCCGAATTCACATTAAGGCGGCACACAATTGTGTCAAGCCTGCGCCAAAAATTCGCAAATCTAATCGCAAGAAGTCCAACGATGCTGCGCGCAATGGTATCCCGGATAAACGCGATTTACGCGCGAAGCAATTCACATCGAGGGACACTCGTAAGAATCGTATCGATGCGATTCGCAAGGCAGTTGGCCATTCGTGTGACGTATGCGGAAAAAAGTTTGGACAGCAGAGTAGCCTCAGAATCCACCTTGACTCTGTGCACAACAATGTCAGGCCGTGTGACATTTGCGGGGAGAAATTCAGGTGGAAGGCTACTCTCAAGAGGCATATCAAAACGATGCACAAAGGTCATACATGCGGTACATGCGGAAAAACGTTTAAACTGAGGATTCAGCGCTTGATTCACAATCGTAACGAACATGATACTACAGCTAGAAAGTCATTTTTGAGTAAGTCCAATCCGAAATCCCACGTCGATACGGCGATTACCGGTGTCGTCGCCCACTCGTGTGATGTATGCGGCAAGAAATTCGCAGGAGAAAAATCCGTTAAAATTCACGCCGGTCGCATGCATAAAGGAATTAAAtctcagaaaaaaaacattcaataa
- Protein Sequence
- MNLNSSSPGSSFAARIKREPSCSNDDTSKNSQESTNDDNLGRRSDDRHEATQNLFNEDGNEFIIEFECKTEFVGNDLIKKEPPVAMQKESSKNRNRKSMIDRERRSKNKLVTTQNLFDKEVSINFACKTETESNPNHILTKKVRDRPNHSLRKGQIEINVGTRNGKSNTNFDDVLNKINKKIKNPKRKSVDVRMTQVAKKSLKPNTKKAVKKRNNYSCNSCEKTFTTNEGLKAHVNSKHKGVTYVCFVCGKGITSHYHLEAHKQSVNVGKRTRACDSCDKKFATRTYPMRHVRSVHNGVEHACNVCGKKYKFKKNLKLHIDSMHRKNEHVCDICGKKFLQKHSLKIHVNAVHKRVRHACDVCGKKYKYKGSLKVHKDFEHKKIARVCDFCKKEFSQKSLLINHINAEHNGVKHACSECGKKYKFKSNLKIHIDSMHRKIEHACDICGKKYTSKSMLGHHKDSKHRKFTYTCDICGKEFKWKTSIIKHIKAAHAGITRNSQKQTSKCKGKLKVHKDSSVHDGVTQSSCGICGKTFARKAQLRIHIKAAHNCVKPAPKIRKSNRKKSNDAARNGIPDKRDLRAKQFTSRDTRKNRIDAIRKAVGHSCDVCGKKFGQQSSLRIHLDSVHNNVRPCDICGEKFRWKATLKRHIKTMHKGHTCGTCGKTFKLRIQRLIHNRNEHDTTARKSFLSKSNPKSHVDTAITGVVAHSCDVCGKKFAGEKSVKIHAGRMHKGIKSQKKNIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -