Tpre010794.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1069165-1071510[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.5e-06 0.00011 22.0 0.9 1 23 148 171 148 171 0.90 2 13 5.2e-06 8.5e-05 22.3 2.0 1 23 176 199 176 199 0.93 3 13 3.5e-05 0.00057 19.7 0.3 2 23 205 227 205 227 0.92 4 13 3.6e-05 0.00059 19.7 0.5 1 23 232 255 232 255 0.91 5 13 5e-06 8.1e-05 22.4 0.2 1 23 260 283 260 283 0.91 6 13 1.2e-06 1.9e-05 24.3 0.2 1 23 288 311 288 311 0.92 7 13 5e-05 0.00081 19.2 3.8 1 23 316 339 316 339 0.92 8 13 1.2e-06 1.9e-05 24.3 0.9 2 23 345 367 345 367 0.92 9 13 0.00042 0.0068 16.3 1.2 1 23 372 395 372 395 0.92 10 13 0.00067 0.011 15.7 1.3 2 23 401 423 401 423 0.95 11 13 0.034 0.55 10.3 2.1 1 23 428 451 428 451 0.90 12 13 1.6e-05 0.00026 20.8 0.6 2 23 457 479 457 479 0.92 13 13 3.6 59 3.9 1.5 2 13 485 496 485 497 0.88
Sequence Information
- Coding Sequence
- ATGGACTTCAGTGATGTATATAACTCtgatgtcagAGTGAAGAAGGAACCAAATGATGTTTCCccaattgaaaatgatgattaTCAGATAATTGACAATGCTCACGATGCGAACACTGAAGAATCCTTGCgatgtcgagaaaattttACTCGTGGCCCTGACGATGTCGAAGTAGAATTCGAATGTAAGGACGAGAAGTTCGGCATTAACTTATTAGTAGTCAAGAAAATCGAGGACGATTATCCAGATCATTTACagcatatgaaaaatagttgcgATTATCAGactcaaaagaaaatgaaagaagaaattgtcgatgaaataaaagaagaattgaATTTGGATGGTGAACTCAGTGATGCATttgatgcaaatgaaaaaacatttgctcaGAATAGTCAATGCAAAACCCAAACTGATAAGGCACGCAATCGTGCCAAAcatccatgtaatatatgtggtcaaaaatttacacaaaaaagtaGTCTCAAGGTCCACACcgatggagtacataatggtgttaaacatgcgtgtagtatatgtgaaaagacattcacacaaaaaggacatctcaaaattcacatcaatgcgatgcataatggtatggcacctacttgcgaaatatgcggaaagaaatttcaaacgaaggATAAACTCAAGATCCATATCGATGgagtgcataatggtgttaaacatgcgtgtggtatgtgtgaaaagacattcacacgaAAAGGATATCTCAAGGTCCACATCGATGCAGTTCATAATGatgttaaacatgcgtgtggtgtatgtggaaagacattcactcaaaaaggagatctcaaaattcacatcgatgcaatTCATAATGGTATTAAACATGAGTGTGgtatatgtggaaagacattcactcaaaaaggagatctcaaaattcacatcgatgcaatTCATAATGGTATTAAACATGAGTGTGgtatatgtggaaagacattcacacataAATGTactctcaaaatccacatcgatgcgatgcataatggtatggcacctaaatgcaaaatatgtgaaaagacattcacacgaAAAGAAGATCTCAAGAGGCATATCGATGgagtgcataatggtgttaaacatacGTGTGGTATATGTGCAAAGATATTCGCACATAAAAGAAATCTCAAAAtgcacatcgatgcgatgcataaaggTATGCAACCAACATGCGAAATATgcagaaagaaatttcaaacgaagaATAAACTTAAGattcacatcgattcagtacataatggtgttagacATGCGTGTGGTAtgtgtgaaaagacattcttACACAAATATACTCTCAAAAtgcacatcgatgcgatgcataaaggTACGGTACCTACTTGCGATgtgtgcggaaagaaattctcaactAAGACTAAActtaaaatccacatcgatgcgatgcataatggtatggcacctacttgcgaagtgTGCAGAAAgacttttttcacaaaagggtaa
- Protein Sequence
- MDFSDVYNSDVRVKKEPNDVSPIENDDYQIIDNAHDANTEESLRCRENFTRGPDDVEVEFECKDEKFGINLLVVKKIEDDYPDHLQHMKNSCDYQTQKKMKEEIVDEIKEELNLDGELSDAFDANEKTFAQNSQCKTQTDKARNRAKHPCNICGQKFTQKSSLKVHTDGVHNGVKHACSICEKTFTQKGHLKIHINAMHNGMAPTCEICGKKFQTKDKLKIHIDGVHNGVKHACGMCEKTFTRKGYLKVHIDAVHNDVKHACGVCGKTFTQKGDLKIHIDAIHNGIKHECGICGKTFTQKGDLKIHIDAIHNGIKHECGICGKTFTHKCTLKIHIDAMHNGMAPKCKICEKTFTRKEDLKRHIDGVHNGVKHTCGICAKIFAHKRNLKMHIDAMHKGMQPTCEICRKKFQTKNKLKIHIDSVHNGVRHACGMCEKTFLHKYTLKMHIDAMHKGTVPTCDVCGKKFSTKTKLKIHIDAMHNGMAPTCEVCRKTFFTKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -