Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:312090-314588[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.1e-05 0.00018 21.3 0.7 1 23 167 190 167 190 0.93

2 12 1.2e-06 2e-05 24.2 0.4 3 23 197 218 196 218 0.95

3 12 2.9e-07 4.8e-06 26.2 2.4 1 23 223 246 223 246 0.95

4 12 9.3e-06 0.00015 21.5 1.5 3 23 253 274 252 274 0.95

5 12 0.0044 0.072 13.1 1.6 1 23 279 302 279 302 0.95

6 12 0.00022 0.0036 17.2 1.0 1 23 307 330 307 330 0.95

7 12 5.9e-07 9.7e-06 25.3 2.2 1 23 335 358 335 358 0.94

8 12 1.4e-05 0.00023 21.0 1.3 1 23 363 386 363 386 0.97

9 12 0.035 0.57 10.3 0.7 2 22 395 415 394 417 0.86

10 12 3.1e-05 0.00051 19.8 2.6 1 23 422 445 422 445 0.95

11 12 1.5e-06 2.4e-05 24.0 6.8 1 23 450 473 450 473 0.96

12 12 4.2e-05 0.00069 19.4 0.3 1 23 478 501 478 501 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.1e-05	0.00018	21.3	0.7	1	23	167	190	167	190	0.93
2	12	1.2e-06	2e-05	24.2	0.4	3	23	197	218	196	218	0.95
3	12	2.9e-07	4.8e-06	26.2	2.4	1	23	223	246	223	246	0.95
4	12	9.3e-06	0.00015	21.5	1.5	3	23	253	274	252	274	0.95
5	12	0.0044	0.072	13.1	1.6	1	23	279	302	279	302	0.95
6	12	0.00022	0.0036	17.2	1.0	1	23	307	330	307	330	0.95
7	12	5.9e-07	9.7e-06	25.3	2.2	1	23	335	358	335	358	0.94
8	12	1.4e-05	0.00023	21.0	1.3	1	23	363	386	363	386	0.97
9	12	0.035	0.57	10.3	0.7	2	22	395	415	394	417	0.86
10	12	3.1e-05	0.00051	19.8	2.6	1	23	422	445	422	445	0.95
11	12	1.5e-06	2.4e-05	24.0	6.8	1	23	450	473	450	473	0.96
12	12	4.2e-05	0.00069	19.4	0.3	1	23	478	501	478	501	0.91

Sequence Information

Coding Sequence: ATGGAATCCAACGGCGTATTTAACTGGGCTatcagAGTAAAAACTGAGCCTTGCCATGAGTCACTTTTGGAAAACAATAGTAATATAATTGACAAGACTCGAGATGGGCAGGATGTTCAATTCTCAAGATTTCTGCGAGAAAATCCAAACCACGGGTTTCAAGAATATGACGGAATGTCTGAACCTCGTGAAGACATGGAAATAGTTTTGGAATGTCAAGATCTGAAGCcgagttttaatttattggcAGTTCAGAAAATCGAAGACTACTCGGAAAACTTGCACAATACTAAATATACTCGAGATTatccaaataaaattaaaatagaaaatatggatggagtgaaaaaagaatatttcgGTAACGTTTCGGAAGAATCGAGTTTGAATTTAAACTGCGAATTTAGCgggcaaaatgaaaaaaatagaattacaACGGACCTCAACGACCAACAGAGATCAAAAACCCACATCAGTCCGATGCATAGTAGTTCTACCCACGCATGTAATGTTTGCGGAAATAAATTCTCAACTAAgggtaatctcaaaactcacatcaaTGCAGTGCACTTAGGTGTCAAAGTTGCATGCGATGTatgcgaaaagacattcacacaaaaaagtgatctcaaaagacacatagattcggtgcacaacggaatcacacatgcatgtgatatttgcggaaaaaagttttcaaccaagagtaatctcaaaacccacGTGAATATGAAGCACATTGGTCTCACCCAAGCATGTGATGtctgcggaaagaaattctcaaaCAAGTGTAATCTCAATACCCATATCGATTCGGTACATAATGTGGTCAAATATGCATGCTACATTTGCGGAAATAAATTCTCAGCCAAGTGTAGTCTCAAAACTCATATAGATTCGATGCATAGTGGTATTACCCACACATGTACTGTTTGCGGAAAGATATTTAAATGGAATAGTAAACTTCAAACTCATATCAATGCAGATCATAATGGTGTCAAACATGCATGTGGTATTTgcggaaaatcattttcacgaaaagaCCATCTTAAATCCCACATCGATTCGCTTCATCGCAAAATCActcataaatgtgatatttgtgaaaaaattttttcaggcCGATCTTACCTCCGGAAACATGTTAATGTGCTACATAGGGGTATTGTGTATGCACGTAAAACATGTGAGACTTGCGGAAAGacgtttatgaaaatgaataatctTAAATTCCATATTGATGCAGTACATATAGGTGTCACGCATGAGTGTAACACATGTGGAAAGATATTCAAATACAAGAGAAGTCTCCGAATCCATATTGATTCGAAGCACAATGATGTCACGCATACTTGTGATgtgtgcggaaagaaattcacaCAGAAGAGTCACCTCAAAAGACACATACATTCGGTACATAATGGTGTAACCCatgcatgtaatatatgcggaaaaaaatttggacaagaaaaaaatcttaaagcCCATGCAGTTATGGCACACTTGCATTCACGCAATCTGCATaagtaa
Protein Sequence: MESNGVFNWAIRVKTEPCHESLLENNSNIIDKTRDGQDVQFSRFLRENPNHGFQEYDGMSEPREDMEIVLECQDLKPSFNLLAVQKIEDYSENLHNTKYTRDYPNKIKIENMDGVKKEYFGNVSEESSLNLNCEFSGQNEKNRITTDLNDQQRSKTHISPMHSSSTHACNVCGNKFSTKGNLKTHINAVHLGVKVACDVCEKTFTQKSDLKRHIDSVHNGITHACDICGKKFSTKSNLKTHVNMKHIGLTQACDVCGKKFSNKCNLNTHIDSVHNVVKYACYICGNKFSAKCSLKTHIDSMHSGITHTCTVCGKIFKWNSKLQTHINADHNGVKHACGICGKSFSRKDHLKSHIDSLHRKITHKCDICEKIFSGRSYLRKHVNVLHRGIVYARKTCETCGKTFMKMNNLKFHIDAVHIGVTHECNTCGKIFKYKRSLRIHIDSKHNDVTHTCDVCGKKFTQKSHLKRHIHSVHNGVTHACNICGKKFGQEKNLKAHAVMAHLHSRNLHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484942;
90% Identity: iTF_01484942;
80% Identity: iTF_01484942;