Tpre002750.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:2335140-2337817[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4e-06 6.5e-05 22.7 0.3 1 23 159 182 159 182 0.96 2 11 5.8e-05 0.00095 19.0 0.3 1 23 187 210 187 210 0.94 3 11 0.00037 0.006 16.5 1.5 1 23 215 238 215 238 0.92 4 11 5.5e-05 0.00089 19.1 0.1 2 23 244 265 244 265 0.95 5 11 4.4e-07 7.2e-06 25.7 0.8 1 23 270 293 270 293 0.95 6 11 9.7e-05 0.0016 18.3 1.6 1 23 298 321 298 321 0.91 7 11 5.9e-05 0.00096 19.0 0.3 2 23 327 349 327 349 0.92 8 11 7e-06 0.00011 21.9 0.4 1 23 354 377 354 377 0.93 9 11 3.3e-05 0.00053 19.8 0.3 2 23 383 405 383 405 0.92 10 11 6.5e-07 1.1e-05 25.1 0.6 1 23 410 433 410 433 0.95 11 11 1.7e-05 0.00028 20.7 0.2 1 23 438 461 438 461 0.91
Sequence Information
- Coding Sequence
- ATGGACTTCAGTGATGTATATAACTCtgatgtcagAGTGAAGAAGGAACCAGATGATGTTTccccaattaaaaatgaagattataaGATAATTGACAATGCATGCGATGCTAAAAACGACGAATTCTCGAGtttttgtcgagaaaatttaATTTATGGGCTtcgtgaaaatgatgaaaattctggACCTAATAACGATTTGGAAATAGAATTCGAATGTAAGGACGAGAAGCTCGGAATTAACTTATTAGTAGTCAAGAAAATCGAGGACGATTATCCAGATCAATGGCagcatatgaaaaatagttgcgATTATCagactcaaaagaaaattaaagaagaaatggTCGACGAAGTAAAAGAGGAATTGAATTTGGATGGTGAACTCAGTGATGCATTTGATGCAAATGAAGAAACATTTGCTCAAAATAGTCAACGCAAAACCCAAACTGATAAGGCACGCAATCGTACCAAAtatccatgtaatatatgcagtaaaaaatttgcacgaaaaggttatctcaaggtccacatcgattcagtacataatggtgttaaacatgcgtgtggtgtatgtggaaagacattcaaatACAAAGGTcctctcaaaatccacatcgattcagtacataatggtgttaaacatacGTGTGGTATATGTGCAAAGATATTCGCACACAAAGGacatctcaaaattcacatcgatgcgatgcataatggtatggcacctacttgcgaagtatgcgggaagaaattcgTAACTGAAGCTGCACTCAAGACTCACATCGATGCACACAATGGTGTTGAAcatccatgtaatatatgcggtaaaaaatttgcacgaaaaagttatctcaaggtccacatcgattcagtacataatggtgttaaacatgcgtgtggtgtatgtggaaagtctttcccacaaaaatgttatctcaaaagtcacatcgatgcgatgcataatggtatggcccctacttgcgaagtatgcggaaagaaatttcaaacgaaggATAAACTcaagattcacatcgatggagtacataatggtgttagacatgcgtgtggtatatgtgaaaagacattcacacaaaaaggagatctcaaaattcacatcaatgcgatgcataatggtatggcacctacttgcgaaatatgcggaaagaaatttcaaacgaaggATAAACTCAAGATCCATATCGATGgcgtacataatggtgttaaacatccatgtaatatatgcggtcaaaaattttcacgaaaaggtaatctcaaggtccacatcgattcagtacataatggtgttaaacatgcgtgtggtgTATGTGGAAAGTCTTTCCCACAAAAAGGTTATCTCAAAagtcacatcgatgcgatgcataaaggtatgacacctacttgcgaagtgtaa
- Protein Sequence
- MDFSDVYNSDVRVKKEPDDVSPIKNEDYKIIDNACDAKNDEFSSFCRENLIYGLRENDENSGPNNDLEIEFECKDEKLGINLLVVKKIEDDYPDQWQHMKNSCDYQTQKKIKEEMVDEVKEELNLDGELSDAFDANEETFAQNSQRKTQTDKARNRTKYPCNICSKKFARKGYLKVHIDSVHNGVKHACGVCGKTFKYKGPLKIHIDSVHNGVKHTCGICAKIFAHKGHLKIHIDAMHNGMAPTCEVCGKKFVTEAALKTHIDAHNGVEHPCNICGKKFARKSYLKVHIDSVHNGVKHACGVCGKSFPQKCYLKSHIDAMHNGMAPTCEVCGKKFQTKDKLKIHIDGVHNGVRHACGICEKTFTQKGDLKIHINAMHNGMAPTCEICGKKFQTKDKLKIHIDGVHNGVKHPCNICGQKFSRKGNLKVHIDSVHNGVKHACGVCGKSFPQKGYLKSHIDAMHKGMTPTCEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -