Tpre011497.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:758058-760003[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.9e-07 3.1e-06 26.8 0.6 1 23 145 168 145 168 0.92 2 12 1.1e-06 1.8e-05 24.4 0.2 1 23 173 196 173 196 0.92 3 12 1.8e-05 0.00029 20.6 0.6 1 23 201 224 201 224 0.91 4 12 2.3e-05 0.00037 20.3 0.2 2 23 230 252 230 252 0.92 5 12 5.6e-06 9.2e-05 22.2 0.1 1 23 257 280 257 280 0.96 6 12 0.00043 0.0071 16.3 1.9 1 23 285 308 285 308 0.91 7 12 3e-05 0.0005 19.9 0.1 5 23 317 335 316 335 0.93 8 12 3.8e-05 0.00061 19.6 1.4 1 23 340 363 340 363 0.91 9 12 0.00016 0.0027 17.6 0.2 3 23 370 391 369 391 0.92 10 12 8.3e-06 0.00013 21.7 0.1 1 23 396 419 396 419 0.94 11 12 0.036 0.59 10.2 0.5 2 18 425 441 425 441 0.95 12 12 0.0041 0.067 13.2 3.4 1 23 452 475 452 475 0.95
Sequence Information
- Coding Sequence
- ATGGACTTCAATGGCGTACATatcagAGTGAAGGAGGAGCCAGATGATGATTCCCCGATCGAAAATGATGATTATCAGATAATTGACAATGCACACGATGCGAACACTAAAGAATCCTTGCgatgtcgagaaaattttacTCGTGGCCCTGACGATATCGAAGTAGAATTCGAATGTAAGGACGAGAAGCTCgacattaatttattaacagTCAGAAAGATAGAGGACGATTATCCAGATCATTTGCAGCATATGGAAAATAGTTACGATAATAAAAcccaaaagaaaattaaaaaagaaattgaggacgaaataaaagaagaattgaATTCGGATGATGAACTCAGTGATGCATttgatgcaaatgaaaaaacatttgctcaaaaaATTCTATGCGAAACTCAAACTGATAAATTACGCATTCGTGCCAAAcatccatgtaatatatgcggtaaaaaattttcacgaaaagatAATCTCAAGATCCACATCGATGCAGttcataatggtgttaaacatgaaTGTGgtatatgtggaaagacattcacacaaaaaggagatctcaagattcacatcgatgcaatTCATAATGGTAttaaacatgcgtgtggtacatgtggaaagacattcacacaaaaaggaaagctcaaaattcacatcgatgcgatgcataatgataaggcacctacttgcgaaatgtgcggaaagaaattcgcaTACAAGAGTGGTCTCAAACTCCACATGGATGCAGTGCACAATAAGATAACTTACACATGTAATGCGtgcggtaaaaaatttgcacgaaaagATAGTCTCATagtccacatcgattcagtacataataatgttaaaCATGCATGTGGTATGTGTGGAAAtacatttacacaaaaatgtgctctcaaaagacacatcgatgcaatgcataatggtatggcacctactttcgaagtgtgcggaaagacattcacgcAAAAAGGAGATCTCAAGAGGCATATCGATggacataatggtgttaaacatgcgtgtggtacttgtggaaagacattcaaacACAATGGTactctcaaaattcacatcgatgcgatgcataatggtatggcacctGCATGCGAAttgtgcggaaagaaatttcaaacgaaggATAAACTCAAGATCCATATcgatggagtacataatggtgttaaacatgcgtgtggtgTGTGTGGAAAGACATATACTCAAAAAGGAGATCTCAAAGTCCACATCGATGTGATTCATAAAggtatggcacctacttgcgaaaTATGTAGTAATACATTTGCACGTAAGAGTAGTCTCAAACGCCAAATGGATGCAGTGCATAATAAGATAACTTACGCATGTAATAcgtgcggcaagacattttctcaaaaaaatcgtcaCGTAACTCACATTAAAACGCAGCATGAAGACATTGCATAA
- Protein Sequence
- MDFNGVHIRVKEEPDDDSPIENDDYQIIDNAHDANTKESLRCRENFTRGPDDIEVEFECKDEKLDINLLTVRKIEDDYPDHLQHMENSYDNKTQKKIKKEIEDEIKEELNSDDELSDAFDANEKTFAQKILCETQTDKLRIRAKHPCNICGKKFSRKDNLKIHIDAVHNGVKHECGICGKTFTQKGDLKIHIDAIHNGIKHACGTCGKTFTQKGKLKIHIDAMHNDKAPTCEMCGKKFAYKSGLKLHMDAVHNKITYTCNACGKKFARKDSLIVHIDSVHNNVKHACGMCGNTFTQKCALKRHIDAMHNGMAPTFEVCGKTFTQKGDLKRHIDGHNGVKHACGTCGKTFKHNGTLKIHIDAMHNGMAPACELCGKKFQTKDKLKIHIDGVHNGVKHACGVCGKTYTQKGDLKVHIDVIHKGMAPTCEICSNTFARKSSLKRQMDAVHNKITYACNTCGKTFSQKNRHVTHIKTQHEDIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485023;
- 90% Identity
- iTF_01485023;
- 80% Identity
- iTF_01485023;