Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:806814-811979[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0011 0.017 15.0 0.3 1 23 45 68 45 68 0.94

2 18 0.061 1 9.5 0.2 1 23 74 97 74 97 0.95

3 18 0.00013 0.0021 17.9 0.9 1 23 127 150 127 150 0.96

4 18 5.1e-05 0.00083 19.2 1.5 2 23 158 180 157 180 0.96

5 18 0.00029 0.0047 16.8 2.0 1 23 186 209 186 209 0.97

6 18 0.77 13 6.0 0.0 7 21 362 376 356 377 0.89

7 18 3.5 56 4.0 0.0 8 22 392 406 391 406 0.88

8 18 0.00089 0.015 15.3 0.5 3 23 852 873 850 873 0.96

9 18 0.004 0.066 13.2 0.0 5 23 883 902 882 902 0.91

10 18 0.0046 0.074 13.0 0.2 1 23 937 960 937 960 0.95

11 18 0.00032 0.0052 16.7 0.1 1 23 966 989 966 989 0.93

12 18 0.1 1.6 8.8 0.1 8 23 1002 1018 997 1018 0.91

13 18 2e-05 0.00032 20.5 0.2 1 23 1024 1047 1024 1047 0.97

14 18 0.0013 0.022 14.7 0.1 1 23 1053 1076 1053 1076 0.94

15 18 0.004 0.065 13.2 0.3 1 23 1241 1264 1241 1264 0.98

16 18 7.6e-05 0.0012 18.6 2.9 1 23 1270 1293 1270 1293 0.95

17 18 1.6e-05 0.00026 20.8 3.4 1 23 1299 1322 1299 1322 0.94

18 18 0.0052 0.084 12.9 6.6 1 23 1328 1351 1328 1351 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0011	0.017	15.0	0.3	1	23	45	68	45	68	0.94
2	18	0.061	1	9.5	0.2	1	23	74	97	74	97	0.95
3	18	0.00013	0.0021	17.9	0.9	1	23	127	150	127	150	0.96
4	18	5.1e-05	0.00083	19.2	1.5	2	23	158	180	157	180	0.96
5	18	0.00029	0.0047	16.8	2.0	1	23	186	209	186	209	0.97
6	18	0.77	13	6.0	0.0	7	21	362	376	356	377	0.89
7	18	3.5	56	4.0	0.0	8	22	392	406	391	406	0.88
8	18	0.00089	0.015	15.3	0.5	3	23	852	873	850	873	0.96
9	18	0.004	0.066	13.2	0.0	5	23	883	902	882	902	0.91
10	18	0.0046	0.074	13.0	0.2	1	23	937	960	937	960	0.95
11	18	0.00032	0.0052	16.7	0.1	1	23	966	989	966	989	0.93
12	18	0.1	1.6	8.8	0.1	8	23	1002	1018	997	1018	0.91
13	18	2e-05	0.00032	20.5	0.2	1	23	1024	1047	1024	1047	0.97
14	18	0.0013	0.022	14.7	0.1	1	23	1053	1076	1053	1076	0.94
15	18	0.004	0.065	13.2	0.3	1	23	1241	1264	1241	1264	0.98
16	18	7.6e-05	0.0012	18.6	2.9	1	23	1270	1293	1270	1293	0.95
17	18	1.6e-05	0.00026	20.8	3.4	1	23	1299	1322	1299	1322	0.94
18	18	0.0052	0.084	12.9	6.6	1	23	1328	1351	1328	1351	0.98

Sequence Information

Coding Sequence: ATGGAGCCAATTGAGCAGAATCTCGGAACAGATTTTTCGCAAGATATTTATCAGAAGGCATGCTCATTAAGCATGACAGTAATATCAAGTCTAATGGAACCCCAAAATACGAAGCCCGAGGATCGCACTGATtttgcttgcgacaagtgcgaggaGAAATTTGTGTTCCAAAGTCAGTTGAGTACGCATCAAATGGCTGCACACACAGACCGCAATGATTTTGCGTGCGATAAGTGTGAGCTGAAATTTGAACTCGAAATGAATTTGATCAGTCACCAAAAGGAAATACATGAAAGTCAAATTGATTCTGCACCCAAACAGAGCAATCCAGTGGTGTTGAGTATCCACCAAGAAATAGTCTGCGAAGCTCGCAAAGACTTTGactgtgacaagtgcgagagaaaatttaaggATCGTATTGATTTGAGCAGGCACATGAGTTCGGTACACAAGGGTGGTCGCAAAGATATCGTTTGCGACCACTGCAATAAGGAATTTACTACTCGAGCAAGTATGGTCAGACATCAAAGAATAACCCACGAAGGACGCTTGGATttcgaatgcgacaagtgtgacaggaaatttggatacaaaaggAGTTTGCTTCAACATCAAAAAAAAGCGCACGATTACATAGGTGAAAACTTCGAGAGAACATTTGAAGATCGAAGCCGTTCGATCAAACGCCGAAAAATAAGCCATAAAAATCGCCAAGATGACGTACGTGAAAATTTCAAGGAGACGATTGTGATTCTACCCGGTTTGATCACCCACCAGGAAACAATCCAAGTAGGTCCGAAAAATGACGTATGCAACAAAAATGAGAGCAAATTTGGACAAGAACATCAATCGCTCAACCGCCAAGAGGCGCTACAAGAAGATCCCAAAGATAGCATATGCGAAAATGTCGGAGAGACATTCGAGGCTCGAAGCAATTTGATCATCCCCCAAGAAATAATCCAAGTAGGTCCGAAAAATGACGTATACGACAATAATGAAAGCAAATTTGGACAAGAACATCAGTCGCTCAACCGCCAAGAGACGTTACAAGAAGATGGCAAAGTTTACTTATGTAACTATGCCGGGCAGACATTTTCGGTTCAAAGCAGTTTGACTaatcaccaaaaaatagtactCGAAGATGGCAAAGATTTCCAATGTGTCAATTCCGAGGAGAAATTTGACGATCAAAGCAGTTTGATCAGACATCAAGAAACAGTCGaggaaggtcacaaagattacgctcccgataattgcgagaacaaaattgaacaaaaacaGCAACTGCTTACTCACCTAGAAACAGCCCAAGAAATTCCCGAAGATGACGTAATCGACAATGGCGAAAAAAACCTTGAACAAACACAACCATTGCTCgtccatcaaaaaatagtacttAAAGATCCTAAACTGCCCATCCACCAAGAAACGGCCCAAGAAAGTCACGAAGTTGAAGTAATCGACAATggcgaaaaaaactttgaacaaAAACAGCCGTTGCTCatccatcaaaaaatagtacttAAAGATCATAAACTGCCCATCCACCAAGAAACAGTTCAAGAAAGTCACGAAGTTAAAGTAACCGACAATggcgaaaaaaactttgaacaaACACAACCATTGCTTGTCCATGAAAAAATAGTACTTAAAGATCCAAAACTGCCCATCCACCAAGAAACGGCCCAAAAAAGTCACGAAGTTGAAGTAATCGacaatggtaaaaaaaaccttgaaCAAAAACAGCCGTTGCTCatccatcaaaaaatagtacttAAAGATCCTAAACTGCCCATCCACCAAGAAACAGTTCAAGAAAGTCACGAAGTTAAAGTAACCGACAATggcgaaaaaaactttgaacaaACACAACCATTGCTCGTCCATGAAAAAATAGTACTTAAAGATCCAAAACTGCCCATCGACCAAGAAACGGCCCAAGAAAGTCACGAAGTTAAAGTAACCGACAATggcgaaaaaaactttgaacaaACACAACCATTGCTCGTCcatcaaaaaattgtacttaaAGATCCTAAACTGCCCATCCACCAAGAAACGGCCCAAGAAAGTCACGAAGTTGACGTAATCGacaatggtaaaaaaaaccttgaaCAAAAACAGCCGTTGCTCatccatcaaaaaatagtacttAAAGATCCTAAACTGCCCATCCACCAAGAAACAGCTCAAGAAAGTCATAAAGTTGACGTAATCGATAATGgccaaaaaaactttgaacaaACACAACCATTGCTCgtccatcaaaaaatagtacttAAAGATCCTAAACTGCCCATCCACCAAGAAACAGCCCAAGAAAGTCATAAAGTTGACGTAATCGACAATGGTGAAAAAAACCTTGAACAAACACAACCATTGCTCgtccatcaaaaaatagtacttAAAGATCCTAAACTGCCCATCCACCAAGAAACAGCTCAAGAAAGTCATAAAGTTGACGTAATCGACAATGGTGCAAAAAACTTCGAACAAACACAGCCGTTGCTCatccatcaaaaaatagtacttGAAGCTACCAAACATTGtttatgtgaaaattgcgGGGATGCATTCGAGGATCCAAGCAGTTTGACCAGACACCGAAgaatagtacacgaagGTTTGATGGATCACTTGAGTGAAAATTGCGGGGAGTCATTTGATGATCAAAACAACTTGACCAAACATCTAGAAGAAGCCCACGGAGATCCCTTGGCTTCTGCATTCGACAGTTCCAGGGAGATATTTCCAAATCCAAGCAGTTTGAGTGGAGACCAAAAATCAGCCTACGAAGttcgcaaagattacttatgtgaaaattgCGCCGAGGCATTTGAAGATTTGAACAGTTTGACCAGACACCAAAAAGTAACCCACGAtcgtcgcaaagattacttatgtgaaaattgCGGGGAGGCATTTGAGGATCCAAGCAGTTTGACAAGTCACAAAAACTTAGTACACGAAGGtgtcaataattattcatgtgACAATTTCGTGGAGACATTCAAAgatcgaagcaatttgatcaaacaccaaGAAATAATCCACGAACAtagcaaagatttttcatgtgacaattgcggaGAGTCATTTGAGGATCCGAGCAGTTTGAGCAAACATAAAGAAACAGCCCACGAAAGTAGCAGAGATTTTTTATGTGACGATTGCGGGGAgacatttgaaggtcaaaacAGTTTGACCGAACACAAAGAAACAGCCCACAAAAGTCATGCTACCGACAATTGCGAGAACAAATTTGGACAAAATCAGCAATCGCTCCCCCACCAGGAGGCAGTCCATGAAAATCGCCAAGATTACTTTCGTGAAAATGTTGGAGAGACATTTGAGATTCCAAGCAGTCTGACCACGTACCAAGAAACAGCCCAAGAAGGTCCTAAAGATGACGTATTCGACAGTTGCGAGAACAAAATCGAACAAAAACAGCAATTGCAATCGCTCACCCACCAAGAGACAGTCAATGAAAATCGCCAAGGTTACGAAAGCGACAAGGGTAGGCAGACATTTGAGATTTCAAGCAGTTTGACCAGCCATCAAGAAACAGCCCAAGAAAGTCACGAAAAAACATCTCAGGATTCGAGCAATTTGACCAgacagcaaaaaataatacacgaaggtgGCAAAGATTATTTCTGTGACTATACCGGAGAGCAGTTGATCAAACGCCAAAAAATAACCCACGAAATAAGCAACGATTACGAGTGTGACCAATGCTGGATGAAATTTGGGAGTAACGAGTCTTTGCTCGACCATAAAAAGACCATCCACATGGGTGTCGAAGAATATCTCTGCAACCAGTGCGACAAGGCCTTCtcaaaaaaaggtaatttaCACTTGCACATAAAAAAGTACCATGAAGGTGACAACGATcacgtatgcgacaagtgcggaaagaagtttaaacaaaaatcgcatttgctcttacaccagATGGCTAtacacgagggtcgtaaaAAGTACACCTGCGAGAGGTGCAAGAAGAAGTTCGGACGAAAATGGCACTACATCAAGCACCACAATACAGTCCACGAACCTCGCCAAAATTCCAGCCGAAATAGAAGGTTCGAGCCGGATCTTGACGATCCAATAAGTTGGATCAACCACccaaaaatagaaaacgaaGATATCAAGAGTGAAGAATGCAAGAGTACACAACAATTTGGACTTCCATCCAATTTGATCGATTACAAAGGAGAGGTCCAGATGATTCACGAATATGAGCCATCGGACAACTGTTATAATTGTTTCATTTGCCGACACAATCGATTGTCAGATCCTGCAACGAATGAAGGCGAAGAAATTGtaagaattaaaattgaacCAGGTCTTGAAACAAATGAAGGTGAAGAAAATGTAAGAAGTGAAGGTGAAGAAAGTgtaagaatgaaaattgaacCATTTCGGTGA
Protein Sequence: MEPIEQNLGTDFSQDIYQKACSLSMTVISSLMEPQNTKPEDRTDFACDKCEEKFVFQSQLSTHQMAAHTDRNDFACDKCELKFELEMNLISHQKEIHESQIDSAPKQSNPVVLSIHQEIVCEARKDFDCDKCERKFKDRIDLSRHMSSVHKGGRKDIVCDHCNKEFTTRASMVRHQRITHEGRLDFECDKCDRKFGYKRSLLQHQKKAHDYIGENFERTFEDRSRSIKRRKISHKNRQDDVRENFKETIVILPGLITHQETIQVGPKNDVCNKNESKFGQEHQSLNRQEALQEDPKDSICENVGETFEARSNLIIPQEIIQVGPKNDVYDNNESKFGQEHQSLNRQETLQEDGKVYLCNYAGQTFSVQSSLTNHQKIVLEDGKDFQCVNSEEKFDDQSSLIRHQETVEEGHKDYAPDNCENKIEQKQQLLTHLETAQEIPEDDVIDNGEKNLEQTQPLLVHQKIVLKDPKLPIHQETAQESHEVEVIDNGEKNFEQKQPLLIHQKIVLKDHKLPIHQETVQESHEVKVTDNGEKNFEQTQPLLVHEKIVLKDPKLPIHQETAQKSHEVEVIDNGKKNLEQKQPLLIHQKIVLKDPKLPIHQETVQESHEVKVTDNGEKNFEQTQPLLVHEKIVLKDPKLPIDQETAQESHEVKVTDNGEKNFEQTQPLLVHQKIVLKDPKLPIHQETAQESHEVDVIDNGKKNLEQKQPLLIHQKIVLKDPKLPIHQETAQESHKVDVIDNGQKNFEQTQPLLVHQKIVLKDPKLPIHQETAQESHKVDVIDNGEKNLEQTQPLLVHQKIVLKDPKLPIHQETAQESHKVDVIDNGAKNFEQTQPLLIHQKIVLEATKHCLCENCGDAFEDPSSLTRHRRIVHEGLMDHLSENCGESFDDQNNLTKHLEEAHGDPLASAFDSSREIFPNPSSLSGDQKSAYEVRKDYLCENCAEAFEDLNSLTRHQKVTHDRRKDYLCENCGEAFEDPSSLTSHKNLVHEGVNNYSCDNFVETFKDRSNLIKHQEIIHEHSKDFSCDNCGESFEDPSSLSKHKETAHESSRDFLCDDCGETFEGQNSLTEHKETAHKSHATDNCENKFGQNQQSLPHQEAVHENRQDYFRENVGETFEIPSSLTTYQETAQEGPKDDVFDSCENKIEQKQQLQSLTHQETVNENRQGYESDKGRQTFEISSSLTSHQETAQESHEKTSQDSSNLTRQQKIIHEGGKDYFCDYTGEQLIKRQKITHEISNDYECDQCWMKFGSNESLLDHKKTIHMGVEEYLCNQCDKAFSKKGNLHLHIKKYHEGDNDHVCDKCGKKFKQKSHLLLHQMAIHEGRKKYTCERCKKKFGRKWHYIKHHNTVHEPRQNSSRNRRFEPDLDDPISWINHPKIENEDIKSEECKSTQQFGLPSNLIDYKGEVQMIHEYEPSDNCYNCFICRHNRLSDPATNEGEEIVRIKIEPGLETNEGEENVRSEGEESVRMKIEPFR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -