Tpre002758.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:2297732-2300878[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.7e-07 1.1e-05 25.1 0.6 2 23 168 190 167 190 0.94 2 13 5.2e-05 0.00085 19.2 0.2 3 23 197 218 196 218 0.97 3 13 0.00013 0.0021 17.9 3.1 1 23 223 246 223 246 0.94 4 13 5.2e-05 0.00085 19.2 1.6 1 23 251 274 251 274 0.94 5 13 2.3e-05 0.00038 20.2 7.0 1 23 279 302 279 302 0.97 6 13 1.4e-05 0.00023 21.0 0.4 3 23 309 330 307 330 0.95 7 13 1.7e-05 0.00028 20.7 2.9 1 23 335 358 335 358 0.93 8 13 0.00034 0.0056 16.6 4.0 3 23 365 386 364 386 0.95 9 13 3.8e-07 6.2e-06 25.9 0.5 3 23 393 414 392 414 0.98 10 13 5.4e-06 8.8e-05 22.3 2.8 1 23 419 442 419 442 0.96 11 13 3.7e-05 0.00061 19.6 1.0 1 22 447 468 447 470 0.89 12 13 2.4e-05 0.0004 20.2 3.9 1 23 475 498 475 498 0.97 13 13 0.0022 0.036 14.0 3.8 1 23 503 526 503 526 0.97
Sequence Information
- Coding Sequence
- ATGGAATCCAGCGGATTATTTAACACTACTGTCGGGGTGAAGGAGGAACCCACTGATGCGTCGcttattgaaaatgatgacGAAATGTTTGACGAGAAACCCGATCTGAAAAACTTTCAACATTCACAATTTCCGCAGacTAATATCCCTCGAATATGTGACGTAAATCATGATAATGAACTTGGAGAAGAAGTGGAAATAGTTGCCGAATGTGAAGACGTCAAGCCCAACATTTATTCActtaaagatgaaaaatttggcGATAATTCTGAAAATCACTTGcgaaatgtaaatattaatggtaatgaaattcaaaaaataattaaattcgaAACAGTGGGTAAAGTGAAACAAGAATTCGTTGGTGACGGTGCAGAAGAATCGAATCCGACTCTCGACTGTGAACTtgtcaaacaaaataaaaaagatagatttacaaaaaagttgagCAACGAAAATAACCTCAAAACGCACACCGGTACGATTCTTAAAATTACAACCCCATGTAAaatatgcgaaaagaaattcgctAATAAGAGCAATCTTAAACgacacatcgattcagtgcacAACAAAATCACTCATggatgtgatatttgtgggAAAGAATTCacacaaaagttttttctgaaaatccACATTGAATCGGCGCATGATAAAATCAGACATGCATGTGAAATATGCaggaagaatttttcaataaagagtcatctcaaaaaacacatagattcggtgcataataaaatcacccATACATGCAATACTTGCGGAAAGTTatttactcaaaaaaattatcttaaaatCCACATTGAATTGgctcataataaaatcatacatacatgcgatatatgcaaaaagaaattcaaacaTAAATCTTACCTGAAAATCCATATCAAATCAACGCATGATGGTATCACCTATGGATGTGatgtatgcggaaagaaattcacaACAAAAAGGAAGCTTAAAGTCCACATCGATGTGATGCATAATGGAGTCacttatacatgtaatatatgcggagagaaattcacacaaaaaaagcaTCTTAAACTCCACTTCGATTCAGTGCACAACAAAATAACTCATggatgtgatatttgtggaaagaaattcaaacaaaagtgTCATCTGAAAATCCACTTCGAATCAGCGCATGATGGTATCACCCATggatgtgatatttgtggaaagaaattcacCCAAAAGTCTTCTCTGAAAATCCACATTAAATCTGTTCATAATAAAATCGCACATACATGCAATAAATGCGGTGAGAAATTCAAACGAAAGTATTATCTGAAAATCCACATTGAATCGGCCCATGATAAAATCAGACATGCATGTGAAATATGCAggaagaatttttcatcaaagagTTATCTCAAAAACCACATCGGTGGAGTCCATAATGGTATCACTCATACATGCAATACTTGCAGAAAGTCatttactcaaaaaaattatcttaaagTCCACATTCAATCGGTACATAATGACATCAAACATACGTGTActatatgcggaaagaaatacTTAAGAATGAGACATCTCAAAGATCATATCAATACAGCTCATGGGGGTATCACCCACTCATGCACCTCAAATGCTACATAG
- Protein Sequence
- MESSGLFNTTVGVKEEPTDASLIENDDEMFDEKPDLKNFQHSQFPQTNIPRICDVNHDNELGEEVEIVAECEDVKPNIYSLKDEKFGDNSENHLRNVNINGNEIQKIIKFETVGKVKQEFVGDGAEESNPTLDCELVKQNKKDRFTKKLSNENNLKTHTGTILKITTPCKICEKKFANKSNLKRHIDSVHNKITHGCDICGKEFTQKFFLKIHIESAHDKIRHACEICRKNFSIKSHLKKHIDSVHNKITHTCNTCGKLFTQKNYLKIHIELAHNKIIHTCDICKKKFKHKSYLKIHIKSTHDGITYGCDVCGKKFTTKRKLKVHIDVMHNGVTYTCNICGEKFTQKKHLKLHFDSVHNKITHGCDICGKKFKQKCHLKIHFESAHDGITHGCDICGKKFTQKSSLKIHIKSVHNKIAHTCNKCGEKFKRKYYLKIHIESAHDKIRHACEICRKNFSSKSYLKNHIGGVHNGITHTCNTCRKSFTQKNYLKVHIQSVHNDIKHTCTICGKKYLRMRHLKDHINTAHGGITHSCTSNAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -