Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:570837-572771[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0021 0.034 14.1 0.2 1 23 30 53 30 53 0.97

2 15 1.6e-05 0.00026 20.8 1.9 1 23 59 82 59 82 0.97

3 15 3.2e-05 0.00053 19.8 3.7 1 23 88 111 88 111 0.97

4 15 0.013 0.21 11.6 1.5 1 23 117 140 117 140 0.95

5 15 0.0017 0.028 14.4 2.2 1 23 146 169 146 169 0.97

6 15 2.9e-05 0.00048 19.9 1.4 1 23 175 198 175 198 0.95

7 15 0.00067 0.011 15.7 5.2 1 23 204 227 204 227 0.97

8 15 4.1e-06 6.8e-05 22.6 2.5 1 23 233 256 233 256 0.98

9 15 0.0016 0.026 14.5 0.8 1 23 262 285 262 285 0.98

10 15 0.00021 0.0034 17.3 2.9 1 23 291 314 291 314 0.97

11 15 0.00025 0.004 17.0 4.0 1 23 320 343 320 343 0.97

12 15 9.2e-07 1.5e-05 24.7 1.1 1 23 349 372 349 372 0.97

13 15 6.2e-06 0.0001 22.1 0.8 1 23 378 401 378 401 0.98

14 15 2.8e-05 0.00046 20.0 1.0 1 23 407 430 407 430 0.97

15 15 7.7e-06 0.00013 21.8 3.9 1 23 436 459 436 459 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0021	0.034	14.1	0.2	1	23	30	53	30	53	0.97
2	15	1.6e-05	0.00026	20.8	1.9	1	23	59	82	59	82	0.97
3	15	3.2e-05	0.00053	19.8	3.7	1	23	88	111	88	111	0.97
4	15	0.013	0.21	11.6	1.5	1	23	117	140	117	140	0.95
5	15	0.0017	0.028	14.4	2.2	1	23	146	169	146	169	0.97
6	15	2.9e-05	0.00048	19.9	1.4	1	23	175	198	175	198	0.95
7	15	0.00067	0.011	15.7	5.2	1	23	204	227	204	227	0.97
8	15	4.1e-06	6.8e-05	22.6	2.5	1	23	233	256	233	256	0.98
9	15	0.0016	0.026	14.5	0.8	1	23	262	285	262	285	0.98
10	15	0.00021	0.0034	17.3	2.9	1	23	291	314	291	314	0.97
11	15	0.00025	0.004	17.0	4.0	1	23	320	343	320	343	0.97
12	15	9.2e-07	1.5e-05	24.7	1.1	1	23	349	372	349	372	0.97
13	15	6.2e-06	0.0001	22.1	0.8	1	23	378	401	378	401	0.98
14	15	2.8e-05	0.00046	20.0	1.0	1	23	407	430	407	430	0.97
15	15	7.7e-06	0.00013	21.8	3.9	1	23	436	459	436	459	0.97

Sequence Information

Coding Sequence: ATGGTAACGAGTGTGAAAAAATCCGAGGAAATTGCATCGGACAATCATTCAATTGAACACGAAATTGTTgttttgaacgaaaaaaaatacgtttgtgatatttgccaggaggcatttacactggAATCAACCATGATAACACATCGATACACAGTTCACGATGAACAAAAAGATTatgcttgcgacaagtgcgacaagaaatttgtgaaaaaaacaagtttgTTTCAGCATCAAAAATCAGCTCACAAAGATCACgaagattactcatgcaacaagtgcgagaagaaatttgaaactaaatcaactttactcaagcataaaaaaatatttcacgaagttttcaaagattacttatgtgaaaagtgcgccaagagatttggaaataaaaagaggTTACTAATGCACATAACGACATTCCATGAGGATTacaaaaatttcgcatgcgacaagtgcgaggaGGAATTTAGAtataaatcgcatttgctATTCCATCTACGGACTGTACATACACATTTAAAAGAATACATATGCGATGactgtgagaaaaaattcagaaataaatttaatttgttctTGCACGTAACAAgagttcacgagggtcgcaaataTTACGCTTGCCAcgagtgtgaaaaaaattttggatatAAAATTCATCTGCACACGCATATAAAAACGGTCCACGAGCGTCggaaagattactcatgtaacaattgcgagaagaaattcggacaaaaatcgactttgttCAGGCACCAacaaacagtccatgaaggtcgcaaagattactcatgcaataggtgcgacaagaaatttggatatctATCGATTTTGCTCGaccaccaaagaacagtacacgaaggtcgcaaagattatgcatgcaacaaatgtgaaaagaaatttggacaaagaCCGCATTTGTTCTCCCATCAAAAGATAacccacgaaggtcgcaaaaatttcgcatgcgataagtgcgagaagaaatttggaatgaAACACGATTTGATTAGACATCAcagaacagtccatgaaggtcgacaagattttgcttgtgacaaatgtcagaagaaatttgcggaacgaagcaatttgatcaaacaccaaagaacagtccatgaaggtcgacAAGATTTtgtttgtgacaaatgtcagaagaaatttgcagAACGAGGCAATTTGTCCAAACACCAAATGACGGTACATGataatcgcaaagattttgcatgcgacaagtgcgagaaaaaatttgaacgaagATCAAATTGGCTTctccatcaaaaaacagtccacggagatcagaaaaattacacgtgcaataattgcgagaagatGTTTAGACATCGAAACGATTTGACCAGACACCAAAAGTTAGTTCACGAAGaaacCGATTACAAACAAGTTGCAACGAGCTGA
Protein Sequence: MVTSVKKSEEIASDNHSIEHEIVVLNEKKYVCDICQEAFTLESTMITHRYTVHDEQKDYACDKCDKKFVKKTSLFQHQKSAHKDHEDYSCNKCEKKFETKSTLLKHKKIFHEVFKDYLCEKCAKRFGNKKRLLMHITTFHEDYKNFACDKCEEEFRYKSHLLFHLRTVHTHLKEYICDDCEKKFRNKFNLFLHVTRVHEGRKYYACHECEKNFGYKIHLHTHIKTVHERRKDYSCNNCEKKFGQKSTLFRHQQTVHEGRKDYSCNRCDKKFGYLSILLDHQRTVHEGRKDYACNKCEKKFGQRPHLFSHQKITHEGRKNFACDKCEKKFGMKHDLIRHHRTVHEGRQDFACDKCQKKFAERSNLIKHQRTVHEGRQDFVCDKCQKKFAERGNLSKHQMTVHDNRKDFACDKCEKKFERRSNWLLHQKTVHGDQKNYTCNNCEKMFRHRNDLTRHQKLVHEETDYKQVATS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01482891;
90% Identity: -
80% Identity: -