Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:4326533-4328405[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.9e-05 0.00031 20.5 2.5 1 23 70 93 70 93 0.92

2 14 1.7e-06 2.8e-05 23.8 1.9 1 23 98 121 98 121 0.96

3 14 7e-06 0.00012 21.9 0.6 1 23 126 149 126 149 0.90

4 14 2.8e-05 0.00045 20.0 3.2 1 23 154 177 154 177 0.96

5 14 0.00081 0.013 15.4 0.5 1 23 183 206 183 206 0.95

6 14 4.4e-05 0.00071 19.4 0.4 1 23 211 234 211 234 0.94

7 14 0.00012 0.0019 18.1 1.5 1 23 239 262 239 262 0.94

8 14 0.00072 0.012 15.6 4.3 1 23 267 290 267 290 0.98

9 14 0.00011 0.0018 18.1 0.3 1 23 295 318 295 318 0.93

10 14 1.6e-05 0.00026 20.8 5.6 1 23 323 346 323 346 0.95

11 14 0.0034 0.055 13.4 1.2 1 23 351 374 351 374 0.93

12 14 5.1e-05 0.00083 19.2 0.9 1 23 379 402 379 402 0.96

13 14 3.8e-05 0.00062 19.6 0.6 1 23 407 430 407 430 0.93

14 14 6.9e-06 0.00011 21.9 2.1 2 23 436 458 435 458 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.9e-05	0.00031	20.5	2.5	1	23	70	93	70	93	0.92
2	14	1.7e-06	2.8e-05	23.8	1.9	1	23	98	121	98	121	0.96
3	14	7e-06	0.00012	21.9	0.6	1	23	126	149	126	149	0.90
4	14	2.8e-05	0.00045	20.0	3.2	1	23	154	177	154	177	0.96
5	14	0.00081	0.013	15.4	0.5	1	23	183	206	183	206	0.95
6	14	4.4e-05	0.00071	19.4	0.4	1	23	211	234	211	234	0.94
7	14	0.00012	0.0019	18.1	1.5	1	23	239	262	239	262	0.94
8	14	0.00072	0.012	15.6	4.3	1	23	267	290	267	290	0.98
9	14	0.00011	0.0018	18.1	0.3	1	23	295	318	295	318	0.93
10	14	1.6e-05	0.00026	20.8	5.6	1	23	323	346	323	346	0.95
11	14	0.0034	0.055	13.4	1.2	1	23	351	374	351	374	0.93
12	14	5.1e-05	0.00083	19.2	0.9	1	23	379	402	379	402	0.96
13	14	3.8e-05	0.00062	19.6	0.6	1	23	407	430	407	430	0.93
14	14	6.9e-06	0.00011	21.9	2.1	2	23	436	458	435	458	0.96

Sequence Information

Coding Sequence: ATGAGTTCTACATCAAACTGTGTCGAcggAACGGAAGATGATCCTAATCATGCCATGCtcaatgatattaattttgaagtatATGTCGAGGAGCTTTTTGAAGAGGTCCCGTTTACGCAATTTCAGGAGGAAGTCACGCGAAGCCACGTGCCGGCAAAAGGCAGATCGTCTCGCGGACGCAAAATGGTCACGCGCAAGAGCCGTAGCCATCCGTGCAACGTCTGCGGAAAAAAGTACAAGAGCAAGAGTTGTCTGAAAATCCACATGGACGCGGCGCATAACGAGATCGATCATCCGTGCGACGTTTGCAAAAAGACGTTCACGACCAAGGGCAATCTCCGGAGCCACGTGAAGTCGGTGCACATGGCCAAGGCCCATACGTGCGACACGTGCGGCAAGAAATTCTCGCAGAAGGGCAATCTCGCGACTCACGTGGACGCGGTGCACAATGCTCGCAGGCATCCGTGCTACAAGTGCGGAAAGCAATTCAAACGGATGAGTTATCTGCGCAGGCACGTCGAGACGATGCACGATCGTATCGCGACCTATCGCTGCGACGCCTGCAGCAGGATGTTTTCGACCAAGGATCGTCTGAAAATTCACGTCGACTCGGTGCACTTGAGCGTCACCTATGCTTGCGACCTCTGTGCCAAAAGTTTCAGCTCCAAGAGCTATTTGCGGATCCACACCGATTCGGTGCACTTGAGCGTCAACTTCAAATGCGACACATGCCAGAGAAAATTTCCGCAGAAAAATAAGCTCAAAATGCACATGGACGCGGAGCATAACGGCGTCACTTACAAATGCGATCAATGTATAAAGACGTTCAAACACAAGCGTACTTtgaaaatccacatcgatacGTATCACAACGGTGTCACTTATCCGTGCGATTTATGCGGCAAGGCGTTCACGCAGAAGGGTTATCTCAAATTTCACATAGATGTGCAACACATCGGTACTACTCACACTTGTCATACGTGTAAGAAAACGTTTCGACAAAAGAGAAATCTTCGggtccacatcgattcggcgCACTTTGGCATCAAACACGAGTGCGACTTGTGCGAGAGAAGATTCGCGCAAAAAAGACAACTCGACATTCACAAGCAAGCGCAGCACATTGGTATCGAATACAAATGCGCCGAATGCGAAAAGACGTTTAAATTGAAAAGGAGTCTGAAGATGCACATCGATGTGAGTCACAACGGTATCACTTATGATTGCGGTATATGCGGCAAGGTATTGACAAGCAAATATTGTCTGAAGAAACATATCGAGGGTATCCATTATGGGAGCATCCAATCGTGCCTACAATGcggtaaaatattcaaacgaaaaaatgaactcAACACTCACATGAAGAAGAATCATTGA
Protein Sequence: MSSTSNCVDGTEDDPNHAMLNDINFEVYVEELFEEVPFTQFQEEVTRSHVPAKGRSSRGRKMVTRKSRSHPCNVCGKKYKSKSCLKIHMDAAHNEIDHPCDVCKKTFTTKGNLRSHVKSVHMAKAHTCDTCGKKFSQKGNLATHVDAVHNARRHPCYKCGKQFKRMSYLRRHVETMHDRIATYRCDACSRMFSTKDRLKIHVDSVHLSVTYACDLCAKSFSSKSYLRIHTDSVHLSVNFKCDTCQRKFPQKNKLKMHMDAEHNGVTYKCDQCIKTFKHKRTLKIHIDTYHNGVTYPCDLCGKAFTQKGYLKFHIDVQHIGTTHTCHTCKKTFRQKRNLRVHIDSAHFGIKHECDLCERRFAQKRQLDIHKQAQHIGIEYKCAECEKTFKLKRSLKMHIDVSHNGITYDCGICGKVLTSKYCLKKHIEGIHYGSIQSCLQCGKIFKRKNELNTHMKKNH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01482842;
90% Identity: -
80% Identity: -