Tpre008023.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1459415-1461315[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.048 0.79 9.8 0.6 2 23 169 191 168 191 0.94 2 13 0.0001 0.0017 18.2 0.4 1 23 196 219 196 219 0.96 3 13 5.8e-06 9.4e-05 22.2 2.4 1 23 225 248 225 248 0.96 4 13 3.5e-06 5.7e-05 22.8 1.5 1 23 253 276 253 276 0.95 5 13 3.3e-05 0.00054 19.8 2.9 1 23 281 304 281 304 0.96 6 13 1.2e-06 2e-05 24.3 1.0 1 23 309 332 309 332 0.96 7 13 1.8e-05 0.0003 20.6 0.7 1 23 337 360 337 360 0.93 8 13 4.6e-05 0.00075 19.3 0.5 1 23 366 389 366 389 0.96 9 13 1.2e-05 0.0002 21.1 0.3 1 23 394 417 394 417 0.94 10 13 5.5e-06 9e-05 22.2 1.5 1 23 422 445 422 445 0.95 11 13 7.8e-07 1.3e-05 24.9 1.5 1 23 451 474 451 474 0.95 12 13 0.00015 0.0024 17.7 0.2 1 23 480 503 480 503 0.95 13 13 0.00011 0.0018 18.1 2.5 1 23 508 531 508 531 0.96
Sequence Information
- Coding Sequence
- ATGAAGTCTAGTGATGCAATCAACTATGCTGCCATtGTAAAACAAGAGGCTAATGACATGTgctacgatgaaaaaaaatatagtgaATCCACAGACCAAACATCCGATACAAAACATTTGCAATACCTCAGATGTCTGCAAGAGAGTACCAATCATACTCTTGAAAAGCTCGAAGATATTCGTGAGTTTCAACCTaaccaagaaattaaaatagagtttgagtgcaaagatgtaaAACCCATTGTGAATTTATTGGTAGCTGataaaaagaacgaagaaattcaaaaactcAAATCTaaccaagaaattaaaatagagtttgagtgcaaagatgtaaAACCAAATTTATTAGAACATAACTtgattaaaatagaaaaaaaggccaCCGAGAAGGAAGAGTTTCTCGGTGGAACTATACAAATTAATGATACACATACTGACTGCCAAATCAGGGGACAAAATGCGAAAATTGATGCTTTAGTTGGtaagagtaaaaaatcaattgaatgtAAAACATGTTTGAAACAATTTCTTACAAAAATGAATCTGAAAGATCACATTGATTCAGAGCATAAACGTGTCAAATACCCATGTTACAATTGTGAAAAGGAATTCGAAAGCAAAAGTTATCTCAAATTACAtattgattcagtgcataGTGGTAAAAAACCTTACCATTGCGATacatgtgaaaagacatttacacaaaaaagtaGTTTGAATACCCATATTGATTCGGTGCATGATTGTATCAAACACCCATGTACCAattgtggaaagacattcaaaaataaaggTTATCTCAAATTGCATATTGATTCGGTGCATAGTGGTATGAGGCACCCATGCCACACgtgcgaaaagacattttcactaAAGTCTAGTCTGAAAATACATATTGATACGGTGCATAAGAGTATTTCCTTCCCTTGTGAGATTTGTGGAAAGTCATTTAAAAGCAGAGGTTATCTCAAATTGCATATTCATTCGGTGCATGATCGCATCAAACACCCATGCCAAACTtgtggaaaaatgttttcacaAAATGGTTATCTTAAATTGCATATTGGTTCAGTGCATAGTGGTCAAAAACCTTACAACTGCGATgtatgcggaaagacatttttacaaaagtctAGTTTGAAAATGCATATCGATTCGTTGCACAATGGAATCAATTACCCGTGTGGCACTTGTGGAAAAATGTTCTCACAAAATCGTTATCTTAAATTGCATATTGGTTCAGTGCATAATTGTATCAAACACCCATGTACCacttgtggaaagacattcaaaAGTAAAGGTTATCTCAAATTGCAtattgattcagtgcataattgTCAAAAACCTTACAACTGCGATGTATGTGGGAAGACATTTACACAAAAGAGTCATCTTATTGTTCATACTGATTCATCGCATAATAATCGGAAACGTTACAACTGTGATatgtgcggaaagacatttgTATTTAAAGCATCTGTAAAACTCcatatcgattcggtgcataatcgTATCAAATACCCATGCCACacttgcggaaagaaattttcacaaaaaggtTATCGTAAAATCCATATTTATTCAGTACATAAACCTACTGCATTTATTTag
- Protein Sequence
- MKSSDAINYAAIVKQEANDMCYDEKKYSESTDQTSDTKHLQYLRCLQESTNHTLEKLEDIREFQPNQEIKIEFECKDVKPIVNLLVADKKNEEIQKLKSNQEIKIEFECKDVKPNLLEHNLIKIEKKATEKEEFLGGTIQINDTHTDCQIRGQNAKIDALVGKSKKSIECKTCLKQFLTKMNLKDHIDSEHKRVKYPCYNCEKEFESKSYLKLHIDSVHSGKKPYHCDTCEKTFTQKSSLNTHIDSVHDCIKHPCTNCGKTFKNKGYLKLHIDSVHSGMRHPCHTCEKTFSLKSSLKIHIDTVHKSISFPCEICGKSFKSRGYLKLHIHSVHDRIKHPCQTCGKMFSQNGYLKLHIGSVHSGQKPYNCDVCGKTFLQKSSLKMHIDSLHNGINYPCGTCGKMFSQNRYLKLHIGSVHNCIKHPCTTCGKTFKSKGYLKLHIDSVHNCQKPYNCDVCGKTFTQKSHLIVHTDSSHNNRKRYNCDMCGKTFVFKASVKLHIDSVHNRIKYPCHTCGKKFSQKGYRKIHIYSVHKPTAFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -