Tpre003748.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:898699-900916[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.6e-06 7.5e-05 22.5 3.6 1 23 171 194 171 194 0.95 2 14 2.2e-05 0.00037 20.3 1.1 2 23 200 222 200 222 0.95 3 14 1.5e-05 0.00025 20.8 0.3 1 23 227 250 227 250 0.96 4 14 6.2e-05 0.001 18.9 4.6 2 23 256 278 255 278 0.92 5 14 2.4e-06 3.9e-05 23.4 1.0 1 23 283 306 283 306 0.93 6 14 0.00017 0.0028 17.5 6.1 1 23 311 334 311 334 0.96 7 14 3.9e-05 0.00064 19.5 1.9 1 23 339 362 339 362 0.94 8 14 1.9e-07 3.1e-06 26.8 0.8 1 23 367 390 367 390 0.96 9 14 3.9e-05 0.00064 19.5 0.2 1 23 395 418 395 418 0.96 10 14 4.2e-05 0.00068 19.5 0.5 2 23 424 446 424 446 0.94 11 14 0.0027 0.043 13.8 4.0 1 23 451 474 451 474 0.90 12 14 1.5e-05 0.00024 20.9 2.5 1 23 479 502 479 502 0.93 13 14 0.0088 0.14 12.1 3.7 3 23 509 530 507 530 0.90 14 14 0.00021 0.0034 17.3 3.6 1 23 535 558 535 559 0.95
Sequence Information
- Coding Sequence
- atgGAATGCAGTGATTTACTCAATTGTGCCATTAGagtgaaacAGGAGTCTAATCATGTGTCGCTTGTTGAAAATGATAGTGAAATGATTGACGAGAAGCCCGATCTTAGAAACTTTCAACTGGTATCATTTTCACCAGAAAATTCGAACCATACGCTTCAAAAATGTGAAGAAAATCATGGAAGTGAACTTGATGACGAAGTGGAAATAGTTGTTGAATGTGAAGACGTCAAGCCCAACTTTGATTTATTAGCAGTGAAGAAAATTGACGATTATTCTCCAAATCACTTGCGGAATGTAATTGATAGTGATGATAAAACTctaaacattattaaaatagaaCCCCCTGgggaagtgaaaaaagaaattatttgtGACGTTACTGAAGAATCAAATTTGAAACTTGAGTGTGAACTCATTgaacgagataaaaaaaacagaaatacaaaaaaggcCGACGATCAATATAAACTCAAAGCACAGGTGGATACGATGCCTAGCAGAAGCATCCACACATGTAAAACATGCGGAAAAACATTTAcacataaaattaatcttaaaatccATATTGATTCGGCGCACAAAGATGTCGCGAATACGTGCACtgtatgtagaaaaaaattcacatctAAAGGTAATCTTAAGGCTCACGTGAATAACGTGCACAATCGTACAAGATATGAATGCGATGTATGTgcaaagacattttcacaaaataattatCTCAAAACACACATCGCTTCAGTTCATAATAAACTCGCATTAAAATGCGATATATGTCACAAGACATTCGCAACAAAATGTAATCTCCGAAACCACATCACATTTGTGCATGATAAAATCAGTCATAGATGTGACACTTGCGGAAAAACGTTTACACGAAGAGGTGaactcaaaattcacatagaTGAGttgcataatggtatcaccCATACATGTGACACATGCGGAAAAAAGTGCAAATATAAGAGCAATcttaaaatccacatcgatcgGTTTCATAATGGTATCACCCATATGTGTGACACGTGCGGACAAAAGTTCAAGTATAAGAGCTATCTCAAAGTCCACATTGATGTGATGCACAATGATTTCGCATATacgtgtgatatttgcgagaaaaaattcacaactAAAAGTAATCTTAAGGCCCACGTGAATAACGTGCACAATCGTATCAGATATGCATGCGATGTATGTgcaaagacattttcacaaaataattatCTCAAAACACACATCGCTTCAGTTCATAATAAACTTGCACCAAAATGTGATATATGTTACAACACATTTTCAACAAAGAGTAACCTCAAAGTCCACATTAGTGCggtacataataaaatcactcatAGATGTGACACTTGCGGAAAAACGTTTACACAAAGAGGTAAACTCAAATGTCACATAGATGAGttgcataatggtatcaccCACATGTGTGATACATGCGGAAAAAACTTCAAGTATAAGAGCAGTCTTAAAAATCACATCGATCAGATTCATAATGGTATCACCCATTTGTGTGACACATGcggaaaaaagttcaagtgtAAGAGCAGTCTCAAAgtccacatcgatgcgatgcataacgGTGTCACACATACGTGTGATACATGTGGAAAGATATTCAGATTTAAATCAAGGCTCAAAGTCCATATTGATTCGGTGCATCACTCAGACATTACAACTTAA
- Protein Sequence
- MECSDLLNCAIRVKQESNHVSLVENDSEMIDEKPDLRNFQLVSFSPENSNHTLQKCEENHGSELDDEVEIVVECEDVKPNFDLLAVKKIDDYSPNHLRNVIDSDDKTLNIIKIEPPGEVKKEIICDVTEESNLKLECELIERDKKNRNTKKADDQYKLKAQVDTMPSRSIHTCKTCGKTFTHKINLKIHIDSAHKDVANTCTVCRKKFTSKGNLKAHVNNVHNRTRYECDVCAKTFSQNNYLKTHIASVHNKLALKCDICHKTFATKCNLRNHITFVHDKISHRCDTCGKTFTRRGELKIHIDELHNGITHTCDTCGKKCKYKSNLKIHIDRFHNGITHMCDTCGQKFKYKSYLKVHIDVMHNDFAYTCDICEKKFTTKSNLKAHVNNVHNRIRYACDVCAKTFSQNNYLKTHIASVHNKLAPKCDICYNTFSTKSNLKVHISAVHNKITHRCDTCGKTFTQRGKLKCHIDELHNGITHMCDTCGKNFKYKSSLKNHIDQIHNGITHLCDTCGKKFKCKSSLKVHIDAMHNGVTHTCDTCGKIFRFKSRLKVHIDSVHHSDITT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -