Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:1147067-1149673[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.006 0.097 12.7 2.3 1 23 226 249 226 249 0.96

2 15 5.5e-06 8.9e-05 22.2 1.3 1 23 255 278 255 278 0.95

3 15 8.6e-05 0.0014 18.5 4.0 1 23 284 307 284 307 0.95

4 15 0.00048 0.0079 16.1 2.6 1 23 313 336 313 336 0.97

5 15 3.9e-06 6.4e-05 22.7 0.9 1 23 342 365 342 365 0.94

6 15 3.2e-06 5.2e-05 23.0 1.7 1 23 371 394 371 394 0.95

7 15 2.1e-05 0.00035 20.4 1.4 2 23 401 423 400 423 0.95

8 15 0.00029 0.0048 16.8 1.2 1 23 429 452 429 452 0.96

9 15 2.8e-06 4.5e-05 23.2 0.5 1 23 458 481 458 481 0.93

10 15 0.00016 0.0025 17.7 2.8 1 23 487 510 487 510 0.95

11 15 0.0014 0.022 14.7 0.8 1 23 516 539 516 539 0.97

12 15 1.2e-05 0.00019 21.2 3.5 1 23 544 567 544 567 0.96

13 15 0.00025 0.004 17.0 1.3 1 23 573 596 573 596 0.96

14 15 0.00041 0.0066 16.3 2.9 1 23 602 625 602 625 0.97

15 15 9.5e-06 0.00015 21.5 1.7 1 23 631 654 631 654 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.006	0.097	12.7	2.3	1	23	226	249	226	249	0.96
2	15	5.5e-06	8.9e-05	22.2	1.3	1	23	255	278	255	278	0.95
3	15	8.6e-05	0.0014	18.5	4.0	1	23	284	307	284	307	0.95
4	15	0.00048	0.0079	16.1	2.6	1	23	313	336	313	336	0.97
5	15	3.9e-06	6.4e-05	22.7	0.9	1	23	342	365	342	365	0.94
6	15	3.2e-06	5.2e-05	23.0	1.7	1	23	371	394	371	394	0.95
7	15	2.1e-05	0.00035	20.4	1.4	2	23	401	423	400	423	0.95
8	15	0.00029	0.0048	16.8	1.2	1	23	429	452	429	452	0.96
9	15	2.8e-06	4.5e-05	23.2	0.5	1	23	458	481	458	481	0.93
10	15	0.00016	0.0025	17.7	2.8	1	23	487	510	487	510	0.95
11	15	0.0014	0.022	14.7	0.8	1	23	516	539	516	539	0.97
12	15	1.2e-05	0.00019	21.2	3.5	1	23	544	567	544	567	0.96
13	15	0.00025	0.004	17.0	1.3	1	23	573	596	573	596	0.96
14	15	0.00041	0.0066	16.3	2.9	1	23	602	625	602	625	0.97
15	15	9.5e-06	0.00015	21.5	1.7	1	23	631	654	631	654	0.98

Sequence Information

Coding Sequence: ATGGCGTCAAAGGAAaagttaaatgaaaatgtattcatagattttgagtgcaaagatgttaaagtTCAACCAACGCCTCCATCAGCAACCACTCGCAAGTCTAAGTATCAAAATGGTCAATCTATtgtaaaagtagaaaaagaaaatccaaTTAAAGATATAgaggaaaatatattaattgactttgagtgcaaagatgttaaaattCAACCGACGGCTTTAATAACAACCATTCACAAGCCTGCGCATCAAAATGTTCAAGCTATAgtaaaagtagaagaagaaaatccaACCAATGATATAGaggaaaatgttttaattgattttgagtgcaaagatgttaaatttGATTCCAAGTCTCAATCCGCAGTCACCTGCAAATCTGAACACCAAAATTTCCAAactgatttaaaaaaacaaaacgaaaaaaatccgtTCAATTACGCGAATGAAAAAcgtctaataattttaattaaaaaaggtttTAATTATgacaataattatcaattgaATACAGACTCCCATTTGCAACAATCGGAAAATAAGAAGCtagaaaatgttaataaaattgttgaaaaaaattcatcatcaaAGTCAAAAGTTGGTCGAAAAACTAATACAGTGTTAGCAAGTACAAAAAAGCATATCAATCCAAAACTTAAAAGCCTTACACAGTATGAATGTGCAGTTTGTTGCAAATCGTTTTCATTCAAGGGTCGCCTTAAAAGGCACATAAATTTAGAACATGGTCAgaacaaaccctttgagtgtgaaatctgtcacaaatcattttcagtCAGAAATTATCTCCAAAAACACATAAATGGAGTACATAAGCGGATCAAACGTtttgagtgtgaaatttgtcacaaatcgtttTCATACAAGACATGTCTTGAAACACACCTGAATGCATTACATAttcagagcaaacccttcaaatgtgacatttgtcacatatcATTTAGATGGAAGCATAATCTCAATTCTCACATCAGTGTAGTACACGaccggagcaaaccctttgaatgtgacactTGTAATAAATCATTCGCACAAAAAGGTAACCTTACATCTCATATACATGCAGTTCATGATCGTattaaaccctttgaatgtgagatttgtcacaaatcatttccAGCCAGGAGTCATCTCAAAAGACACATAATGGGAGTTCATAAGCGGATTAAACGTTctgagtgtgaaatttgtcacaaatcgtttTCAGACAAGGGTTACTTTAAAACACACTTGAGTATAatacataatcagagcaaacccttcgaatgtgagatctGTCATAAATCGTTTGGGCAAAAACCTAACCTTAACTTTCACATAACTACAGTTCATAATCGTATCAAATcgttcgaatgtgagatttgtaaCAAACCATTTGGATCTAAGGATCACCTTCAAAGGCATATAACGGCAGTACATAAAcgaagcaaaccctttgaatgtgacatttgtcacaagtcatATGGTCGCAAGGATCACCTCGtttctcataaaaatttaattcatgtTCGTAACCActcctttgaatgtgacatttgtcaaaaaaaatttgaatacaaGTACATATTAAGAAGTCACATTATAAAAGAACATATtggcaaacccttcgaatgtaagatttgtcataaaaactttaaaaaaaaaagtttgctcaAAAGTCACCTAAAAGCAGCGCATAATTCCAGCAACCCCTTCGAATGCAATATTTGCCACTTTAGAGTTAAACAAAGAAATAATCTTATAACTCACATGAACGCAGTTCATAATCaaatcaaaccctttgaatgtgatatttgtcacagaACTTTCGGATACCAGCATGTACTCAAAACACATATTATTACAATGCAcgatcgtatcaaaccctttaaatgtgagatttgtcataaagcATATGGGAATAGTACTACTCTCAAAAGGCATATAAATTCAGTTCATATGCGTATCAAACACTGCtag
Protein Sequence: MASKEKLNENVFIDFECKDVKVQPTPPSATTRKSKYQNGQSIVKVEKENPIKDIEENILIDFECKDVKIQPTALITTIHKPAHQNVQAIVKVEEENPTNDIEENVLIDFECKDVKFDSKSQSAVTCKSEHQNFQTDLKKQNEKNPFNYANEKRLIILIKKGFNYDNNYQLNTDSHLQQSENKKLENVNKIVEKNSSSKSKVGRKTNTVLASTKKHINPKLKSLTQYECAVCCKSFSFKGRLKRHINLEHGQNKPFECEICHKSFSVRNYLQKHINGVHKRIKRFECEICHKSFSYKTCLETHLNALHIQSKPFKCDICHISFRWKHNLNSHISVVHDRSKPFECDTCNKSFAQKGNLTSHIHAVHDRIKPFECEICHKSFPARSHLKRHIMGVHKRIKRSECEICHKSFSDKGYFKTHLSIIHNQSKPFECEICHKSFGQKPNLNFHITTVHNRIKSFECEICNKPFGSKDHLQRHITAVHKRSKPFECDICHKSYGRKDHLVSHKNLIHVRNHSFECDICQKKFEYKYILRSHIIKEHIGKPFECKICHKNFKKKSLLKSHLKAAHNSSNPFECNICHFRVKQRNNLITHMNAVHNQIKPFECDICHRTFGYQHVLKTHIITMHDRIKPFKCEICHKAYGNSTTLKRHINSVHMRIKHC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -