Tpre006781.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:4811265-4813783[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.8e-06 7.8e-05 22.4 1.6 1 23 166 189 166 189 0.96 2 14 5.2e-08 8.5e-07 28.6 0.3 1 23 217 240 217 240 0.96 3 14 0.0059 0.096 12.7 3.6 1 23 245 268 245 268 0.88 4 14 0.023 0.37 10.9 0.3 1 14 273 286 273 296 0.83 5 14 2.6e-07 4.3e-06 26.4 0.9 1 23 301 324 301 324 0.96 6 14 2.4e-05 0.00038 20.2 2.2 1 23 329 352 329 352 0.94 7 14 8.8e-05 0.0014 18.4 1.1 1 23 357 380 357 380 0.91 8 14 0.039 0.63 10.1 1.1 1 23 385 408 385 408 0.86 9 14 1.6e-07 2.6e-06 27.1 1.6 1 23 413 436 413 436 0.96 10 14 1.9e-05 0.00031 20.5 0.3 1 23 441 464 441 464 0.95 11 14 0.00026 0.0042 17.0 2.6 1 23 469 492 469 492 0.91 12 14 4.4e-05 0.00071 19.4 0.8 1 23 497 520 497 520 0.90 13 14 5.3e-07 8.6e-06 25.4 0.5 1 23 525 548 525 548 0.97 14 14 2.6e-05 0.00042 20.1 2.7 1 23 553 576 553 576 0.97
Sequence Information
- Coding Sequence
- ATGGAATCCAGTGCTTTATTCACAGGAGCCGTTAGAGTAAAAGAGGAGCCTAGCGATGTGTCCCACAGTGAAAATGATTGCGACGAGAAACCCGATCTGAAAAACTACCAACGCCTACCATTTCCACAAGAATATTCGACCTGTACTCTTCGAAAATGTGACGTAAACCATGGAACTGAATTTGACCATGATGTGGAAGTAGTCGTTGAATGTGAAGATGTCAAGCCTTTTATGGATTTattaaaagctaaaaaatttgacaacGATTCTCAACAACTCGCGAAATATAGCGATGATTATGGAActcgaaatataattaaaatggaACCCACGAAGGAAGTAAAACAGGAATTTCCCGATGGCTCTGTAGAAGAATCGAATGTGAATTTCGACCGTGAACTCAACAAGCagaatgaaagaagaaaaatcacaaaaatgcCTTACAAAGTACATAAAGTCAAAAGATGCATCGGTTCGATGAATAGTAAAACAATCCACCCATGTaaaatatgcggaaagaaattgtCAAGTCAGAGTAGTCTCAACAGGCATGTCAAATCATTACACTCGTGTCAAATGTACGACAggacattttcatttaaaggTAATCACCAAATGCACGTTGCCTCGATGCACAATGGGGTCACTTATGAATGTAATGaatgtggaaagtcatttGTACGAAAGGACAGCCTCAAAATCCACATGGATTCCGTGCACaataaaattacgcatgcatgtgatatttgtgaaaGAACCTTCTTCCACAAACGCAGTCTCAAAAATCATAAGGATGCGATGCATAACAGTATCACATATGCATGCGATGTGTGTGGAAAAACGTTCAAGTACCAAAATATACTCAAATTCCACGTCGATGTAGTACACAATGGTGTCACTTATGAATGtgataaatgtaaaaagtcATTTGCACGAAAAGATAGTCTCCAAAGACATATCAATGCGATGCACAATGGTGTGAGCCATGCATGCGATATGTGCCCAAAAACATTCTGCTCAAAGGCTTATCTTAAAGTCCACATGGATTCCGCGcacaataaaattacatacgcatgtgatatttgtgaaaagacattctcaaCTAAAGGTAACCTCAGATGCCACAtggatgcgatgcataatagTATCACACACGCATGCGATGCGTGTGAAAAAACGTTCAAGCGCAAATTTGAACTAAAATTCCACATCGATGCAGTACACAATGGTGTCACTTATGAatgtaataaatgtaaaaagtcattttcacgaaaagaGAGTCTCCAAAGACATATCAATGCGTTGCACAATGGTGTTGCGTACGCATGcaataaatgtgaaaagacattcacagaAAAGGGAagtctcaaaatccacatcgattccgtgcacaataaaattacgcatgcatgtgataattgtgaaaaaatgttcgtcCACAAACGCAGTCTCAAAAACCATAtggatgcgatgcataatagTATCACATATGCATGCCATGTATGTGAAACGACGTTCAAGCGCAAATATGAACTCAAAGTCCACGTCGATGCAGTACACAATGGTGTCACATATACGTGCGATATGTGCGGAAAGGCATTCACACTAAAAgcaaatctcaaaaaacatattgagaagatgcacaatggtgtcaatTATCCGTGTCATACGTGCGAAAGGACTTTCAAACGAAAGGATCGTCTGAAGCTCCACATGGAATCTGTGCACAACCAAATCAGACAGTCGTGCGTATTTGCAAAAAGGAATTCCTAA
- Protein Sequence
- MESSALFTGAVRVKEEPSDVSHSENDCDEKPDLKNYQRLPFPQEYSTCTLRKCDVNHGTEFDHDVEVVVECEDVKPFMDLLKAKKFDNDSQQLAKYSDDYGTRNIIKMEPTKEVKQEFPDGSVEESNVNFDRELNKQNERRKITKMPYKVHKVKRCIGSMNSKTIHPCKICGKKLSSQSSLNRHVKSLHSCQMYDRTFSFKGNHQMHVASMHNGVTYECNECGKSFVRKDSLKIHMDSVHNKITHACDICERTFFHKRSLKNHKDAMHNSITYACDVCGKTFKYQNILKFHVDVVHNGVTYECDKCKKSFARKDSLQRHINAMHNGVSHACDMCPKTFCSKAYLKVHMDSAHNKITYACDICEKTFSTKGNLRCHMDAMHNSITHACDACEKTFKRKFELKFHIDAVHNGVTYECNKCKKSFSRKESLQRHINALHNGVAYACNKCEKTFTEKGSLKIHIDSVHNKITHACDNCEKMFVHKRSLKNHMDAMHNSITYACHVCETTFKRKYELKVHVDAVHNGVTYTCDMCGKAFTLKANLKKHIEKMHNGVNYPCHTCERTFKRKDRLKLHMESVHNQIRQSCVFAKRNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -