Tpre003575.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:22441-24727[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.6 26 5.0 0.0 5 23 12 31 11 31 0.94 2 18 0.00029 0.0047 16.8 3.2 1 23 37 60 37 60 0.97 3 18 8.3e-05 0.0014 18.5 1.7 1 23 66 89 66 89 0.96 4 18 0.00025 0.0041 17.0 2.7 2 23 96 118 95 118 0.95 5 18 0.00019 0.0031 17.4 0.6 1 23 124 147 124 147 0.96 6 18 0.00049 0.008 16.1 0.2 1 23 174 197 174 197 0.96 7 18 8.8e-06 0.00014 21.6 2.1 1 23 203 226 203 226 0.97 8 18 5.4e-05 0.00089 19.1 0.9 1 23 232 255 232 255 0.98 9 18 0.0072 0.12 12.4 0.4 1 23 260 283 260 283 0.95 10 18 4e-05 0.00065 19.5 0.3 1 23 289 312 289 312 0.95 11 18 1.4 23 5.2 0.4 3 23 321 342 320 342 0.77 12 18 0.0001 0.0016 18.3 1.1 1 23 348 371 348 371 0.97 13 18 2.2e-05 0.00036 20.3 1.1 1 23 377 400 377 400 0.96 14 18 0.63 10 6.3 2.4 1 23 406 429 406 429 0.94 15 18 0.0032 0.053 13.5 0.3 1 23 435 458 435 458 0.96 16 18 2.5e-05 0.00041 20.1 0.9 1 23 464 487 464 487 0.98 17 18 2.7e-07 4.3e-06 26.4 0.7 1 23 493 516 493 516 0.97 18 18 0.00016 0.0027 17.6 4.2 1 23 522 545 522 545 0.98
Sequence Information
- Coding Sequence
- ATGTATAAAGATGAAAAACAATACGTTagtgatatttgccaggaggcatttactctcgaatcaagcatgataatgcaccgagacacaattcacaatgagcTAAAAGATTACTCTTGCGATAAGTGCGAacagaaatttgagttccgaagtcatttgagtagacaccaaatatcagaacacaaaagccacaaagattttccatgcgacagatgtgagaagaaatttgtgaaaaaatcgagtttgttcaCACATCAGAAATTAATTCACAAAAAACAAGACGACCtctcatgcaacaagtgcgagagaaaatttgaaaataaatcgactttactcaagcataaaaaaatatttcacgaagttctcaaagattacttgtgtgaaaagtgcgccaagagatttggaaataagcaaaatttgctcttgcacataaagacagtacacaaCAAGCTAGAAAAGCAAATGGGACAAAAATGGAAATTGATGAGACACCAAAGggcagtccatgaaggtcgtaaagattttgtatgcgacaattgtgagaggaaatttggaagTGAAGGAGCTTTGTACAAGCACCAAAGGgcaattcatgaaggtcgcaaagattacgcttgcaataagtgtgagaaggcatttacacaaaaaacgAGTTTGCTCCACCATCAAAAAGTAGTTCACGAAgatcgaaaatattattcatgcGATAGGTGCGAGATAAAGttcgagaaaaaatcaaatttgctcgtACATCAAAAGACCGTCCACGAAGTGCGAGAATTCCCATGCGATAGgtgtgggaagaaatttggactaaaatggaTGATGTTAcagcaccaaaaattagtacacgaaggtcgcaaagattttgcatgcgacaagtgcgagaaaaaatttggggttcGAAGCAATTTGACAGCACACCAAAAAGCAGTCCACGAAGCTCGCCAAGATTACGCATCATGTGACAGgtgtgggaagaaatttggactaaaatggaTTATGTTAcagcaccaaaaattagtacacgaaggtcgcaaagattttgcatgcaacgagtgcgagaagaaattcggacaaaaatctaatttgctctttcaccaaaggacagtccacgagggtcgcaaagattttccatgcgataagtgtgagaagaaattcggtcAGCAAAGTAATTTGCTCactcacaaaaaaattatgcatgaaggtcgtaaagatttcacatgtgacaaatgcaaaCATAAATTTGCACTAAAATGGATTATGACtcagcaccaaaaaatagtccacgaaggtcgcaaagatttcgcatgtgacaagtgcgagcttAAATCtggaagtaaatcagatttgttgaaacaccaaaaaatagtccacgaaggtcgcaaagatttcgtatgcgacaagtgtggaAGAGAATTCGGATacaaatcaacttttctcttacaccaaaggacagtccacgaaggtcagaaagattattcatgcgacaaatgcgataaGACATTTGcccaaaaatcgagtttgatttcgcaccaaaaaataatccacgaaggtcgcaaagattttacatgtgacaaatgcgagaagaaattcgggcTTAAGCAAAATTTAAGGAAgcatcaaaaaaaattccacgatGTCAATTAA
- Protein Sequence
- MYKDEKQYVSDICQEAFTLESSMIMHRDTIHNELKDYSCDKCEQKFEFRSHLSRHQISEHKSHKDFPCDRCEKKFVKKSSLFTHQKLIHKKQDDLSCNKCERKFENKSTLLKHKKIFHEVLKDYLCEKCAKRFGNKQNLLLHIKTVHNKLEKQMGQKWKLMRHQRAVHEGRKDFVCDNCERKFGSEGALYKHQRAIHEGRKDYACNKCEKAFTQKTSLLHHQKVVHEDRKYYSCDRCEIKFEKKSNLLVHQKTVHEVREFPCDRCGKKFGLKWMMLQHQKLVHEGRKDFACDKCEKKFGVRSNLTAHQKAVHEARQDYASCDRCGKKFGLKWIMLQHQKLVHEGRKDFACNECEKKFGQKSNLLFHQRTVHEGRKDFPCDKCEKKFGQQSNLLTHKKIMHEGRKDFTCDKCKHKFALKWIMTQHQKIVHEGRKDFACDKCELKSGSKSDLLKHQKIVHEGRKDFVCDKCGREFGYKSTFLLHQRTVHEGQKDYSCDKCDKTFAQKSSLISHQKIIHEGRKDFTCDKCEKKFGLKQNLRKHQKKFHDVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -