Tpre012103.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:566620-569069[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.3e-05 0.00038 20.3 0.5 1 23 124 147 124 147 0.96 2 15 0.93 15 5.8 0.5 8 23 160 176 159 176 0.91 3 15 2.6e-05 0.00042 20.1 1.8 1 23 182 205 182 205 0.98 4 15 3.4e-07 5.6e-06 26.0 2.5 1 23 211 234 211 234 0.98 5 15 3.7e-05 0.00061 19.6 0.6 1 23 240 263 240 263 0.98 6 15 8.1e-06 0.00013 21.7 1.7 1 23 269 292 269 292 0.97 7 15 3.7e-06 6e-05 22.8 1.2 1 23 298 321 298 321 0.98 8 15 9.1e-05 0.0015 18.4 1.1 1 23 327 350 327 350 0.95 9 15 8.3e-05 0.0013 18.5 0.7 1 23 356 379 356 379 0.95 10 15 0.0025 0.041 13.8 0.8 1 23 385 408 385 408 0.95 11 15 7.4e-06 0.00012 21.8 3.5 1 23 414 437 414 437 0.95 12 15 0.0025 0.041 13.8 0.8 1 23 443 466 443 466 0.95 13 15 5e-06 8.2e-05 22.3 4.2 1 23 472 495 472 495 0.97 14 15 4e-05 0.00066 19.5 1.3 1 23 501 524 501 524 0.95 15 15 9.7e-05 0.0016 18.3 0.9 1 23 530 553 530 553 0.95
Sequence Information
- Coding Sequence
- ATGGAGAACGCAGAGAACGCAATCAgGGTGAAGCAGGAGCCGAAGGACGATTTGGACGACGATTACGTTTTAGACTCGGTGGACTCTGGTGAggttaaaaatgttgaaacatTCACGTTTGATAACACATCGgcaaatcaAATGAATGAGATTGTGGCATttccgaaaaaattaaatgagaaaatatcCGTAgtttttgagtgcaaagatgttaaacttgAACTGAAACCATTATCGACGAACACCTGCAAAACCGAGTATCAAAGTTATCCACCTATTGCAAAAGTAGAGAATCCAATTCAGATCAGTTACCTGAATGAATATAAGAAGGCTACAATATTTGGAAACGGTACTGAAGCAATATTATCTTATGAGTGCAAAATTTGTCGAAAAACGTATAAAAGAGAAGTTGCTCTTAGAAGTCATATCAATTTGATACACAAGACCAATAGATCACATGAATATGCGATTGatcaaaaatcatttagacGAAAAGAACGTCTTAAAATTCACACAAATGCAGTACAcgatcggagcaaacctttcgagtgtgatGTTTGTCACAattcatttggacgaaaaggtCACCTCAAtgttcacataaatacagtacatgatcgtatcaaacccttcgaatgtgatatttgccataAGTCATTCAGTCGTGAATATTAcctaaaaaatcacataaatacagtacattatcggagcaaaccctttgagtgtgatatttgtcacaaatcatttggagaaaaaggtcGCCTCAAtgttcacataaatacagtacattatcggagcaaaccctttgagtgtgatatttgtcacaaatcatttggagaaaaaggtcACCTCAATGTTCACATAAAatcagtacatgatcgtatcaaaccttttgaatgtgagatttgttataaatcatttggacaaaaacatgatctcaaaattcacataaatacagtacattataggagtaaacccttcgaatgtgagatttgtcacaaatcctTTGGAGCAAAGGGTACTCTGAATcatcacataaatgcagtacataatcagatcaaaccctttgaatgtgagatttgtcacaattCATTTGGTTACAAGGGTgatctcaagaaacacatAAATGGTGTACATGATCGTATTAagcccttcgaatgtgagatttgtcacaaatcctTTGGAGAAAAGGGTATTCTGAATcatcacataaatgcagtacataatcgtatcaaaccctttgaatgtgagatttgtcacaaatcatttggaaaaaagagTCACCTCAAAAAACACGTAAATGGTGTACATGATCGTATTAagcccttcgaatgtgagatttgtcacaaatcctTTGGAGAAAAGGGTATTCTGAATcatcacataaatgcagtacataatcgtatcaaaccctttgaatgtgagatttgtcacaaatcatttggaaaaaagagTCACCTCAAAAAACACGTAAATGTAATGCATGATAAGAtgaaacccttcgaatgtgagatttgtcacaaatcctTTGGAGAAAAAGGTACTCTGAATcatcacataaatgcagtacataatcagatcaaacccttcgagtgtagCATTTGTCACAATTCATTTGGTTACAAGGGTgatctcaagaaacacatAAATGGTGTACATGATCGTATTAAACCCTTttaa
- Protein Sequence
- MENAENAIRVKQEPKDDLDDDYVLDSVDSGEVKNVETFTFDNTSANQMNEIVAFPKKLNEKISVVFECKDVKLELKPLSTNTCKTEYQSYPPIAKVENPIQISYLNEYKKATIFGNGTEAILSYECKICRKTYKREVALRSHINLIHKTNRSHEYAIDQKSFRRKERLKIHTNAVHDRSKPFECDVCHNSFGRKGHLNVHINTVHDRIKPFECDICHKSFSREYYLKNHINTVHYRSKPFECDICHKSFGEKGRLNVHINTVHYRSKPFECDICHKSFGEKGHLNVHIKSVHDRIKPFECEICYKSFGQKHDLKIHINTVHYRSKPFECEICHKSFGAKGTLNHHINAVHNQIKPFECEICHNSFGYKGDLKKHINGVHDRIKPFECEICHKSFGEKGILNHHINAVHNRIKPFECEICHKSFGKKSHLKKHVNGVHDRIKPFECEICHKSFGEKGILNHHINAVHNRIKPFECEICHKSFGKKSHLKKHVNVMHDKMKPFECEICHKSFGEKGTLNHHINAVHNQIKPFECSICHNSFGYKGDLKKHINGVHDRIKPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -