Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:4262885-4265409[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6.7e-06 0.00011 22.0 0.6 1 23 179 202 179 202 0.91

2 14 2.3e-06 3.7e-05 23.4 0.6 1 23 207 230 207 230 0.96

3 14 1.3e-05 0.0002 21.1 0.8 1 23 235 258 235 258 0.94

4 14 0.073 1.2 9.3 4.6 1 23 263 286 263 286 0.91

5 14 0.00044 0.0072 16.2 5.0 1 23 291 314 291 314 0.92

6 14 0.00024 0.0039 17.1 3.8 1 23 319 342 319 342 0.93

7 14 1.5e-06 2.5e-05 24.0 1.0 1 23 347 370 347 370 0.96

8 14 2.9e-06 4.7e-05 23.1 0.5 1 23 375 398 375 398 0.95

9 14 6.2e-05 0.001 18.9 0.4 1 23 403 426 403 426 0.91

10 14 0.039 0.64 10.1 0.6 1 14 431 444 431 454 0.85

11 14 3e-07 4.8e-06 26.2 0.8 1 23 459 482 459 482 0.97

12 14 2.9e-05 0.00048 19.9 0.2 1 23 487 510 487 510 0.95

13 14 0.0004 0.0065 16.4 2.3 1 23 515 538 515 538 0.90

14 14 3.2e-07 5.3e-06 26.1 0.5 1 23 543 566 543 566 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6.7e-06	0.00011	22.0	0.6	1	23	179	202	179	202	0.91
2	14	2.3e-06	3.7e-05	23.4	0.6	1	23	207	230	207	230	0.96
3	14	1.3e-05	0.0002	21.1	0.8	1	23	235	258	235	258	0.94
4	14	0.073	1.2	9.3	4.6	1	23	263	286	263	286	0.91
5	14	0.00044	0.0072	16.2	5.0	1	23	291	314	291	314	0.92
6	14	0.00024	0.0039	17.1	3.8	1	23	319	342	319	342	0.93
7	14	1.5e-06	2.5e-05	24.0	1.0	1	23	347	370	347	370	0.96
8	14	2.9e-06	4.7e-05	23.1	0.5	1	23	375	398	375	398	0.95
9	14	6.2e-05	0.001	18.9	0.4	1	23	403	426	403	426	0.91
10	14	0.039	0.64	10.1	0.6	1	14	431	444	431	454	0.85
11	14	3e-07	4.8e-06	26.2	0.8	1	23	459	482	459	482	0.97
12	14	2.9e-05	0.00048	19.9	0.2	1	23	487	510	487	510	0.95
13	14	0.0004	0.0065	16.4	2.3	1	23	515	538	515	538	0.90
14	14	3.2e-07	5.3e-06	26.1	0.5	1	23	543	566	543	566	0.96

Sequence Information

Coding Sequence: ATGTGTGGCTTTAGTACAGAAAAGTCGTTCGCTGTCGAAATATCAAAAGCGAGAAAGATGGAATCTTCAAATGACATTTTCAACGGCTCCGTaagGGTTAAACAGGAGCCCATTGACGTAACgccaattgaaaatgaaattcacgAAATGGTTGACGAGAAACCGgacgttaaaaattttcaatttcatacaTTTCGGCGAGAAAATCCAacCGAAACTCACGATGACTTGGAAATAACGTTCGAGTGTCAGGACGTAAAGCCCAGCGTGGGTTCATTAGtcgtaaaaaaacttgacaATTATTCTCACTTACAGAATATGATGTATAGCGATGATTGTAAGATTcaaaatagtataaaaatagaaaatgaagtGGTACTAGGAGAAGAATCATTGGGagatgaagcaaaaaaattaattgtgaaTTACGGCTGTGAAATTAGCAagcgaaatgaaaagaaaaatataacagAAGAGTTTAGTCACAATCATAGATCCAAAACGAATATTAACACGGTGTTAAATGgtgtcacacatgcatgcgatatatgtgacaagaaattcaaacgaaaatatgcactcaaaatccacatcgatgctGTGCACAATGGTATCACTTATGAATGTAATAAATGTAGAAAGTCATTTGCACGAAAGGAGAGTCTTCAAATACATATCAATGCGATGCACAATGGTGTGAGCCATGCATGCGATATGTGCCCAAAGACATTCGGCACAAAGACTAATCTCAAAAACCACATCGATTCCGCGCACAATAAAAttacacatgcatgtgatatttgtgaaaGAACATTCCTCCACAAATGCAGTCTCAAAAACCATAtggatgcgatgcataatagTATCACATATGCATGCCATgtatgtgaaaagaaattcaaatacAAACATAAACTCAAAATCCACATGGATTTCGTGCACaataaaattacgcatgcatgtgatatttgtaaaaagacATTCTCAACTAAAGGTAACCTCAGATGCCATATGAATGCGATGCATAATAGTATcacatataaatgtaataaatgtaGAAAGTCATTTGCACGAAAGGAGAGTCTTCAAATACATATCAACGCGATGCACAATGGCGTTGCGTACGCATGcaataaatgtgaaaagacattcacacaaaagggaagtctcaaaatccacatcgattccgtgcacaataaaattacgtacgcatgtgatatttgtgaaaagacattctcaaCTAAAGGTAACCTCAAATTCCATAtggatgcgatgcataatagTATCACACACGCATGCGATGTGTGCGGAAAGACGTTCAAGTACCAACATATACTCAAATTCCACGTCGATGCAGTACACAATGGTGTCACTTATGAATGTAATAAATGTGCAAAgtcattttcacgaaaaggTAGTCTCCAAAGACATATCAATGTATTGCACAATGGTGTTGCttatgcatgcgataaatgtgaagagacatacacacaaaagggaaatctcaaaatccacatcgattccgtgcacaataaaattacgcatgcatgtgatatttgtgaaaagacattctcaaCTAAAGGTAACCTCAGATGCCATAtggatgcgatgcataatggtattaCTCATTCTTGTGATAtctgtggaaaaaaatttggacaaaaatcaaatcttaAAGCTCACATTGCTATGGCACATCGCTCACgcatcaacaaaaaataa
Protein Sequence: MCGFSTEKSFAVEISKARKMESSNDIFNGSVRVKQEPIDVTPIENEIHEMVDEKPDVKNFQFHTFRRENPTETHDDLEITFECQDVKPSVGSLVVKKLDNYSHLQNMMYSDDCKIQNSIKIENEVVLGEESLGDEAKKLIVNYGCEISKRNEKKNITEEFSHNHRSKTNINTVLNGVTHACDICDKKFKRKYALKIHIDAVHNGITYECNKCRKSFARKESLQIHINAMHNGVSHACDMCPKTFGTKTNLKNHIDSAHNKITHACDICERTFLHKCSLKNHMDAMHNSITYACHVCEKKFKYKHKLKIHMDFVHNKITHACDICKKTFSTKGNLRCHMNAMHNSITYKCNKCRKSFARKESLQIHINAMHNGVAYACNKCEKTFTQKGSLKIHIDSVHNKITYACDICEKTFSTKGNLKFHMDAMHNSITHACDVCGKTFKYQHILKFHVDAVHNGVTYECNKCAKSFSRKGSLQRHINVLHNGVAYACDKCEETYTQKGNLKIHIDSVHNKITHACDICEKTFSTKGNLRCHMDAMHNGITHSCDICGKKFGQKSNLKAHIAMAHRSRINKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -