Tpre011961.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:359260-361412[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.8e-06 3e-05 23.7 0.2 1 23 159 182 159 182 0.93 2 14 2.1e-05 0.00034 20.4 1.0 1 23 187 210 187 210 0.91 3 14 0.0063 0.1 12.6 0.1 2 23 216 237 216 237 0.95 4 14 3.9e-06 6.3e-05 22.7 0.7 1 23 242 265 242 265 0.92 5 14 8.2e-05 0.0013 18.5 0.4 1 23 270 293 270 293 0.92 6 14 2.5e-06 4.1e-05 23.3 1.2 1 23 298 320 298 320 0.96 7 14 3.2e-06 5.3e-05 22.9 1.1 1 23 325 348 325 348 0.92 8 14 0.00027 0.0045 16.9 0.6 1 23 353 376 353 376 0.92 9 14 3.8e-05 0.00063 19.6 0.7 2 23 382 404 382 404 0.95 10 14 4.2e-05 0.00068 19.5 0.3 2 23 410 431 410 431 0.95 11 14 0.012 0.19 11.7 2.1 1 23 436 458 436 458 0.94 12 14 0.0004 0.0065 16.4 5.1 1 23 463 486 463 486 0.92 13 14 4.7e-05 0.00076 19.3 0.9 2 23 492 514 492 514 0.95 14 14 1.5e-06 2.5e-05 24.0 1.1 1 23 519 542 519 542 0.94
Sequence Information
- Coding Sequence
- ATGGACTTCAGTGATGTATATAACTCtgatgtcagAGTGAAGAAGGAACCAGATGATGTTTCccgaattaaaaatgaagattataaGATAATTGACAATGCATGCGATGCTAAAAACGACGAATTCTCGAGtttttgtcgagaaaatttaATTTATGGGCTtcgtaaaaatgatgaaaattctggACCTAATAACGATTTGGAAATAGAATTCGAATGTAAGGACGAGAAGCTCGGCATTAATTTATTAGTAGTCAAGAAAATCGAGGACGATTATCCAGATCAATGGCagcatatgaaaaatagttgcgATTATCAgactccaaaaaaaattaaagaagaaattgtcgACAAAGTAAAAGAGGAATTGAATTTGGATGGTAAACTCAGTGATGCATttgatgcaaatgaaaaaacatttgctcaaaATAGTCAACACAAAATCCAAACTGATAAGGCACGCAATCGTACCAAAtatccatgtaatatatgcggtaaaaaatttgcacgaaaaaattatctcaaggtccacatcgatggagtacataatggtgttaaacatgcgtgtggtgtatgtggaaagtctttcccacaaaaatttcatctcaaaattcacatcgatgcgatgcataatggtatggcacctacttgcgaagtatgcgggaagaaattctTAACTGAAGCTGCACTcaagattcacatcgatgcacacaatggtgttaaacatccATGTAATGTATGcggtcaaaaattttcacgaaaaagtTATCTCAAGGTCCACATCGATGGAGTTCATAATGGTGTTAAGCATACGTGTGGTCTATGTGCAAAGACTTTCACCCGAAAAGGagatctcaaaattcacatcgatgcaatTCATAATTGTATTAAACATGAGTGTGgtatatgtgaaaagacattcacacaaaaaagaGAACTCAGGAGGCATATCGAGggacataatggtgttaaacatccatgtaatatatgcggtcaaaaattttcacgaaaaggTCATCTCAAGGTCCACATCGATGGAGTTCATAATGGTGTTAAGCATGAGTGTGGTCTATGTGCAAAGACTTTCAAACAAAaaggttatctcaaaattcacatcgatgcgatgcataatggtatggcacctaAATGCGATATATGTGCAAAGACTTTCACACAAAAAcgttatctcaaaattcacatcaatgcgatgcataatggtatggccCCTACTTGcgaaatatgcggaaagaaatttcaaacgaagaCTGCACTCAAGATCCACATCGATggacataatggtgttaaacatgcgtgtggtgtatgtgaaaagacattcacacaaaaatgtATTCTCAAGATCCACATGGATggacataatggtgttaaacatacGTGTGTtacatgtggaaagacattcacacataAATGttctctcaaaattcacatcgatgcgatgcataatggtatggccCCTACTTGcgaaatatgcggaaagaaatttcaaacgaagaATAAACTCAAGATCCATATCGATagagtacataatggtgttaaacatgcatGTAgtatatgtggaaagacattcataCTAAAgggtaatcttaaaaaacacatgaatTTGATGCATAATAAGATATTGTAA
- Protein Sequence
- MDFSDVYNSDVRVKKEPDDVSRIKNEDYKIIDNACDAKNDEFSSFCRENLIYGLRKNDENSGPNNDLEIEFECKDEKLGINLLVVKKIEDDYPDQWQHMKNSCDYQTPKKIKEEIVDKVKEELNLDGKLSDAFDANEKTFAQNSQHKIQTDKARNRTKYPCNICGKKFARKNYLKVHIDGVHNGVKHACGVCGKSFPQKFHLKIHIDAMHNGMAPTCEVCGKKFLTEAALKIHIDAHNGVKHPCNVCGQKFSRKSYLKVHIDGVHNGVKHTCGLCAKTFTRKGDLKIHIDAIHNCIKHECGICEKTFTQKRELRRHIEGHNGVKHPCNICGQKFSRKGHLKVHIDGVHNGVKHECGLCAKTFKQKGYLKIHIDAMHNGMAPKCDICAKTFTQKRYLKIHINAMHNGMAPTCEICGKKFQTKTALKIHIDGHNGVKHACGVCEKTFTQKCILKIHMDGHNGVKHTCVTCGKTFTHKCSLKIHIDAMHNGMAPTCEICGKKFQTKNKLKIHIDRVHNGVKHACSICGKTFILKGNLKKHMNLMHNKIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -