Tpre006794.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:4292356-4294351[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.7e-07 2.8e-06 27.0 0.6 1 23 152 175 152 175 0.96 2 13 4.3e-08 7.1e-07 28.8 3.4 1 23 180 203 180 203 0.98 3 13 2.3e-06 3.7e-05 23.4 1.2 1 23 208 231 208 231 0.90 4 13 0.0001 0.0017 18.2 2.8 1 23 236 259 236 259 0.95 5 13 0.0022 0.035 14.1 1.0 1 23 264 287 264 287 0.86 6 13 6.1e-07 9.9e-06 25.2 1.7 1 23 292 315 292 315 0.98 7 13 5e-06 8.2e-05 22.4 2.3 1 23 320 343 320 343 0.94 8 13 7.8e-05 0.0013 18.6 1.3 1 23 348 371 348 371 0.92 9 13 0.0015 0.024 14.6 0.7 1 23 376 399 376 399 0.88 10 13 1.6e-08 2.6e-07 30.2 0.9 1 23 404 427 404 427 0.98 11 13 0.0028 0.045 13.7 0.3 7 23 438 455 438 455 0.94 12 13 3.5e-06 5.7e-05 22.8 1.1 1 23 460 483 460 483 0.94 13 13 1.5e-05 0.00025 20.8 0.8 1 23 488 511 488 511 0.97
Sequence Information
- Coding Sequence
- atgaaaatgatgGAACCAAGTACTACATTTAACTTTGCTGTCAGGGTAAAAGATGAACCTGCAGATGGATGGCagagtgaaaataattttgagatTTCTGACACGACTCCTGATACTTCAGTGAggACTCGTGTGCTTCAAGAGAATGACGAAAATTCTGATGTTGATGACAGAATAGAGATAATTCTTGAATGTGAAGACGTGAAGCTGGATATGAAATTACTCGTAGTTAAGAAGAATGAAGAGGACTCTTCACAATACTTGCAAGATACGGATGGTAACAACTATAATCAAactcataaaaaagttaaaatagaACCTGCAGACGAAGTGAAAAAGGAAATAGATCTGAATTTCAACAATGAACTCATCCAGGCGCTTGATACAcgcgaaaaatcatttacCCGAGAAAGTGTTTTAAAACGGAAAGTTGAATCATCGCATAGTATAACCTAttcatgtgacaaatgcggaAAGGCATACTCAACtaagagtaatctcaaaactcacatagaTTCTGTGCACAAAGATGTCACTTATGAATGTAATAAATGTAGAAAGTCATTTTCACGAAAGGATagtctcaaaaaacatattaggacgatgcacaatggtgtgaaacatgcatgtgatatatgcccAAAGACATTCAGTACAAAGACTAATCTCAAAAACCACATCGATTTCGCGCACaataaaattacgcatgcgtgTGATACTTGTGGAAAAGCATTTCTCCATAAATACAGTCTCAAAAAGCATATGAATGTGGTGCATAGTAGTATCACACACGCATGCGATGTGTGTGGAAAGACGTTCAAGTACCAAAATACACTCAAATTCCACGTCGATGTAGTACACAATGGTGTCACATATACGTGCGATATGTGCAGAAAGGCATTCACGCTAAaagaaaatctcaaaaaacatattaggacgatgcacaatggtgtgaaacatgcatgtgatatatgcccAAAGACATTCTGCACAAAGACTAATCTCAAAGTCCACATCGATTCCGTGcacaataaaattacatacgcatgtgatatttgtgaaaagacattctcaaCTAAAGGTAACCTCAGATGCCATATGGATGAAATGCATAATAGTATCACATATGCATGCGATGCGTGTGGAAAGACGTTCAAGCGCAAATATAAACTCAAATTCCACGTCGATGTAGTACACAATGGTATCACTTATGAATGTAATGaatgtggaaagtcatttGTACGAAAGAATACTCTTCAAAGACATATCAATACGTTGCACAATGGTGATGCTCATCCGTGTGTTGCACGTGGAAAGACATTCGCTCGAAAGAGtgaactcaaaaatcatatgaatGCGAAGCACAAGGATGTCAATCATCGATGCGATGTATGTCAAAAGACATTTGCGCGAAAAGACAATCTTCGAATCCACGTTAATGCAATGCACAAAGGTGTTACTTTTCCATGCAAtgtttgcggaaagaaatttttatataaaaccaACCTCAATAGGCACGTTAGATCGCCGCATATTGGTAAAACTTAA
- Protein Sequence
- MKMMEPSTTFNFAVRVKDEPADGWQSENNFEISDTTPDTSVRTRVLQENDENSDVDDRIEIILECEDVKLDMKLLVVKKNEEDSSQYLQDTDGNNYNQTHKKVKIEPADEVKKEIDLNFNNELIQALDTREKSFTRESVLKRKVESSHSITYSCDKCGKAYSTKSNLKTHIDSVHKDVTYECNKCRKSFSRKDSLKKHIRTMHNGVKHACDICPKTFSTKTNLKNHIDFAHNKITHACDTCGKAFLHKYSLKKHMNVVHSSITHACDVCGKTFKYQNTLKFHVDVVHNGVTYTCDMCRKAFTLKENLKKHIRTMHNGVKHACDICPKTFCTKTNLKVHIDSVHNKITYACDICEKTFSTKGNLRCHMDEMHNSITYACDACGKTFKRKYKLKFHVDVVHNGITYECNECGKSFVRKNTLQRHINTLHNGDAHPCVARGKTFARKSELKNHMNAKHKDVNHRCDVCQKTFARKDNLRIHVNAMHKGVTFPCNVCGKKFLYKTNLNRHVRSPHIGKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484895;
- 90% Identity
- iTF_01484895;
- 80% Identity
- iTF_01484895;