Tpre003353.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:818432-821759[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.2 69 3.7 0.1 5 21 178 194 176 195 0.90 2 19 0.0057 0.093 12.7 2.9 1 23 203 226 203 226 0.97 3 19 0.00019 0.0031 17.4 1.4 1 23 231 254 231 254 0.96 4 19 6.8 1.1e+02 3.1 2.8 1 20 269 288 269 292 0.78 5 19 1.4e-05 0.00023 20.9 3.1 1 23 298 321 298 321 0.98 6 19 2e-05 0.00033 20.5 0.4 1 23 327 350 327 350 0.95 7 19 6.9e-06 0.00011 21.9 0.9 1 23 356 379 356 379 0.97 8 19 7.9e-05 0.0013 18.6 1.1 1 23 385 408 385 408 0.97 9 19 0.0028 0.045 13.7 2.3 1 23 414 437 414 437 0.97 10 19 1.8e-05 0.0003 20.6 0.3 1 23 443 466 443 466 0.94 11 19 0.0026 0.043 13.8 4.4 1 23 472 495 472 495 0.95 12 19 0.00039 0.0064 16.4 1.2 1 23 501 524 501 524 0.96 13 19 5e-05 0.00082 19.2 4.7 1 23 530 553 530 553 0.97 14 19 1.1e-05 0.00018 21.3 0.5 1 23 559 582 559 582 0.94 15 19 9e-06 0.00015 21.6 2.7 2 23 589 611 588 611 0.96 16 19 7e-05 0.0011 18.7 0.5 1 23 617 640 617 640 0.97 17 19 0.0034 0.055 13.5 1.4 1 23 646 669 646 669 0.94 18 19 0.00017 0.0027 17.6 0.5 1 23 675 698 675 698 0.98 19 19 0.00042 0.0068 16.3 0.7 1 23 704 727 704 727 0.97
Sequence Information
- Coding Sequence
- ATGGAAGGTAGCAGTGACGTAGTTAGggtgaaggaagagccgaaCTATAATTGGCTGGATGTAGAAGACGGTTCTATCTTCGATCCGGTGGACTCCTGTACAGTCGAAAACTTTGAAACAATACAATTTCTTGCATTACCCGCAAATCTCGAGGATGCGGCTGTGGCGTTACAGGAGAGGTCAtgtgaaaaaagaatcaaagGTTCTGAATGCGAAGATGTTAAACCAGAACTGAAATCTCTTCCCATGAGTGTTAACAAATTTGAGTTTCAACATTTTCAGtctattgtaaaaatagagAATGAAAATCGGACCATTgacacgaatgaaaaaaaaatgttaattttgattaaaaagggatttgattatgaaaataattgccaGTTTAATATAAACTCCAGTTTTACCATTGCCAAAtgcaaaaatcgaaaaagtttaGATGGGACTGTTACAAGAAAGTCGTCGCGTgaatcaaaaatgtattcaaaaacagaaaaagcAGATCCAAAAAAGCATACAAATACGACTGTAGTTTGCAATGAATCATTTTCCTGTAGAAGTGACCTcgaaattcattcaaaaatgcAAGGTGATTACAAAAaactcttcgaatgtgagatttgtcacagtTCATTCAGCTGCAAGGACTACCTCAATAATCACAtaaatatagtacatgatTGTAAATCCTTCGAATgcgaaatttgtcacaaatcatttggataccgaTTTGTACTTAAGAACCACATGAATGCTGTGCATGTTTCTAGAGAATcttatgaaaaagaagaacaagatAGCAGTTTCGAATGCAATATTTGTCATAATTCATTTGGACTGAAAGATGACCATATAAATCACGTACATGGATatcataatcggagcaaaccctttgaatgtgagatttgtcataaattatttggCCAGAATAGTCACcttaaaactcacataaatacagtacataatcgcaTCAAGCcattcgaatgtgagatttgtcaaaagtcatttggactaaaaaaaGACCTCAGAAGACATATgagtgcagtacataatcggattaaacccttcgagtgtgaaatttgtcacaaatcatttggagaaaagagTACTCTCAATCGTCACGTTAATGTAATACATGATCGtagtaaaccctttgaatgtgtgatttgtcacaaatcgtttggacaaaaaataagCCTTAATTATCACATAAGTACAATACATTATCGtagtaaaccctttgaatgtggtCAATGTCACAAGTCATATGGACGTAAGGGAACCCTCAAGTTTCACATACGTTCAGTTCATGATCGGGGccaacccttcgaatgtgagatttgtaaAAAGTCATTTGGACTAAGAAGTGACCTCAAAAGACATAtaagtgcagtacatgatcgaagcaaaccctttgaatgtgagatttgtcacaagtcaTATAGACGTAAGGGAACCCTCAAGTTTCACATACATTCAGTtcatgatcgtatcaaacccttccaatgtgacatttgccttaaatcatttggactaaaacataatttaaaataccacataaatgcagtacatgattaTGGCGAACgcttcgaatgtgacatttgtcacaaatcatttggactcaGAAGTCACTTCAAAAGGCATATAAATAaagtacataatcggatcaAACCATTCCAATGTgagatttgtaacaaatcatttggatacaagagtAAACTTAAAATACACTTAATTGAAGTgcatgatcgtatcaaaccttGCGAATGTgggatttgtcacaaatcatatgACCGCAAGAGTGACcttaaaattcatataaatacagtacattatCCCAGCaaatccttcgaatgtgacatttgtcacaaatcatttggaatcGAGAGAAATCTCAATCAACACATAAATATAGTACATACTCGTAATAAACCCTTCcaatgtgagatttgttacaaatcatttgaatgCAAAGACCAGCTGACTGTTCACCTGAGTGCAGTTCATATTAACAGCATACCCTTCGAGTGtcaaatttgttataaactaTTTGAACAAAAAGTTAGCTTAGAATCTCATATCAATACAATGCATAATCATAagaaaccctttgaatgtgaaatttgtcacaaatcatttggataccagaatatactcaaaattcacatgaaTGTTATACATCGTCGGAACAAGTTTTAG
- Protein Sequence
- MEGSSDVVRVKEEPNYNWLDVEDGSIFDPVDSCTVENFETIQFLALPANLEDAAVALQERSCEKRIKGSECEDVKPELKSLPMSVNKFEFQHFQSIVKIENENRTIDTNEKKMLILIKKGFDYENNCQFNINSSFTIAKCKNRKSLDGTVTRKSSRESKMYSKTEKADPKKHTNTTVVCNESFSCRSDLEIHSKMQGDYKKLFECEICHSSFSCKDYLNNHINIVHDCKSFECEICHKSFGYRFVLKNHMNAVHVSRESYEKEEQDSSFECNICHNSFGLKDDHINHVHGYHNRSKPFECEICHKLFGQNSHLKTHINTVHNRIKPFECEICQKSFGLKKDLRRHMSAVHNRIKPFECEICHKSFGEKSTLNRHVNVIHDRSKPFECVICHKSFGQKISLNYHISTIHYRSKPFECGQCHKSYGRKGTLKFHIRSVHDRGQPFECEICKKSFGLRSDLKRHISAVHDRSKPFECEICHKSYRRKGTLKFHIHSVHDRIKPFQCDICLKSFGLKHNLKYHINAVHDYGERFECDICHKSFGLRSHFKRHINKVHNRIKPFQCEICNKSFGYKSKLKIHLIEVHDRIKPCECGICHKSYDRKSDLKIHINTVHYPSKSFECDICHKSFGIERNLNQHINIVHTRNKPFQCEICYKSFECKDQLTVHLSAVHINSIPFECQICYKLFEQKVSLESHINTMHNHKKPFECEICHKSFGYQNILKIHMNVIHRRNKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -