Tpre011929.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:286569-288581[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.1e-05 0.00083 19.2 0.8 3 23 165 186 164 186 0.95 2 13 7.3e-07 1.2e-05 25.0 1.5 1 23 191 214 191 214 0.94 3 13 1.2e-05 0.00019 21.2 0.6 1 23 219 242 219 242 0.94 4 13 4.6e-05 0.00075 19.3 1.7 1 23 247 270 247 270 0.94 5 13 2.6e-06 4.2e-05 23.3 0.6 1 23 275 298 275 298 0.94 6 13 7.6e-07 1.2e-05 24.9 0.7 1 23 303 326 303 326 0.96 7 13 2.6e-06 4.2e-05 23.3 0.6 1 23 331 354 331 354 0.94 8 13 0.00012 0.002 18.0 0.0 1 23 359 382 359 382 0.93 9 13 7.2e-05 0.0012 18.7 0.4 1 23 387 410 387 410 0.93 10 13 3.5e-07 5.7e-06 26.0 1.3 1 23 415 438 415 438 0.96 11 13 0.00028 0.0046 16.9 0.8 1 23 443 466 443 466 0.91 12 13 0.0012 0.02 14.9 6.1 1 23 471 494 471 494 0.97 13 13 2.7e-06 4.4e-05 23.2 0.7 1 23 499 522 499 522 0.95
Sequence Information
- Coding Sequence
- ATGGAAACTAGTGGTTTATTCAATCCTGCTGTTAgagtgaaagtCGAGCCTTGTGATGATTTGCTTACccaaaataattatgaaaccATCAACGAGATACCCGTAACTGAAAATGTCAAGTACGAAATGATTCTTCAAGAAAACTTGacCCGAGAGGTTCAAAAATATGACGAATATCAAGAAAATGACGACTTGCAAATCGAGTTGGAATGTACAGATATGAAGCCCTATTTATTGACAGTGGCgaaaattgaagattattCTCCAAATTTCAGGCCACATAGCGATGTTTATAAAAACGgaagcaaaataaaactcgAAACTGACGGGACAgtgaagaaagaaatttttagcGAAGAAGAATCTAATTTAAATTCAGGACGTGGACtcagcgagaaaaatgaaacaggAAATGTTTCAAAAGAGATGAACTACGAACATAGGCTAAAAACTCACACTGAATCAGCCCGTAATGGCAATGTTACACCTGCATGTGATGTATGTAGAAAATCATTTAGATTTAAGAGTTTTCTCCAAAGACACATCAATGCGGTGCATCGTAAAATAAGgcatgcatgcgatatatgccaaaagacattctcatccaagagtaatctcaaaactcacatcgattcggtgcataatgatgtttcacatgcatgtgatatttgcggaaaagtGTTCATACTAAGAGGTCATCTCAATAggcacatcgattcggtacaTCGTAAAATAAGGCATACATGCGAAacatgccaaaagacattctcagcCAAGAGTAGTCTTAGAAATCATATCGGTTCGGTGCATAATAGTGTCCGTcatgcatgcgatatttgcCCAAAGAAATTCTCAGACAAGGGTtatctcaaaaagcacatcgcttcggtgcataatggtgtcacatatgcatgtgatatttgtgaaaagacattcacacggAAGGGTCATCTCAAAATCCATATCGATATGGTGCATAATAGTGTCCGTcatgcatgcgatatttgcCCAAAGAAATTCTCAGACAAGGGTtatctcaaaaagcacatcgcttcggtgcataatggtgtcacataTGCATGTGATGTTTGTGGAAAGGCATTCGCAGGCAAGAGTAATCGTAAAGCTCACATTGAAGCGATTCACAATGGTGTCagacatgcatgcgatatttgcggaaaTGTTTTTACACGAAGAGGCgatctcaaaactcacgtcgattcgatgcataatggtgtcaggCATGAATGCAATGTTTGCGGAAAGAAGTTCACACAAAATGGTTCTCTCAAACGTCACATCGAATCAGAGCATAATGGTGTCAGGCATGCATGTGATATGTGCACAAAGAAATTTACTGCGAAAAGAAATCTTAAAGCCCATATCGATGCGGAGCACAATGGAATCATCCACACATGTGATTtatgtgcaaaaaaatttaaatatcaaacTCATCTCAATAAACATGTCAAATCCTCGCATAGTGGTATCATACATTCATGCGAGACATGCGGCAAGACGTTCGGACAGAAAAGAAATCTGAGAGCTCACATCGATGTGGCGCATCGCTCGCTCAATACGAtctaa
- Protein Sequence
- METSGLFNPAVRVKVEPCDDLLTQNNYETINEIPVTENVKYEMILQENLTREVQKYDEYQENDDLQIELECTDMKPYLLTVAKIEDYSPNFRPHSDVYKNGSKIKLETDGTVKKEIFSEEESNLNSGRGLSEKNETGNVSKEMNYEHRLKTHTESARNGNVTPACDVCRKSFRFKSFLQRHINAVHRKIRHACDICQKTFSSKSNLKTHIDSVHNDVSHACDICGKVFILRGHLNRHIDSVHRKIRHTCETCQKTFSAKSSLRNHIGSVHNSVRHACDICPKKFSDKGYLKKHIASVHNGVTYACDICEKTFTRKGHLKIHIDMVHNSVRHACDICPKKFSDKGYLKKHIASVHNGVTYACDVCGKAFAGKSNRKAHIEAIHNGVRHACDICGNVFTRRGDLKTHVDSMHNGVRHECNVCGKKFTQNGSLKRHIESEHNGVRHACDMCTKKFTAKRNLKAHIDAEHNGIIHTCDLCAKKFKYQTHLNKHVKSSHSGIIHSCETCGKTFGQKRNLRAHIDVAHRSLNTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -