Tpre006731.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1547019-1549497[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.1 50 4.1 0.2 7 23 173 190 173 191 0.88 2 15 5.3e-06 8.7e-05 22.3 0.4 1 23 195 218 195 218 0.95 3 15 5.8e-07 9.4e-06 25.3 0.8 1 23 223 246 223 246 0.96 4 15 2.6e-07 4.2e-06 26.4 0.4 1 23 251 274 251 274 0.96 5 15 3.1e-05 0.0005 19.9 1.3 1 23 279 302 279 302 0.94 6 15 0.0074 0.12 12.4 0.9 1 23 307 330 307 330 0.94 7 15 6.8e-06 0.00011 21.9 1.0 1 23 335 358 335 358 0.94 8 15 1.4e-06 2.4e-05 24.0 2.7 1 23 363 386 363 386 0.96 9 15 2.2e-06 3.6e-05 23.5 1.3 1 23 391 414 391 414 0.92 10 15 0.013 0.21 11.6 0.6 1 23 419 442 419 442 0.90 11 15 9.9e-07 1.6e-05 24.6 1.3 1 23 447 470 447 470 0.96 12 15 1.7e-05 0.00028 20.7 0.4 1 23 475 498 475 498 0.92 13 15 1.7e-05 0.00027 20.7 1.7 1 23 503 526 503 526 0.96 14 15 7.4e-06 0.00012 21.8 1.0 1 23 531 554 531 554 0.96 15 15 3.3e-05 0.00053 19.8 3.2 1 23 559 582 559 582 0.96
Sequence Information
- Coding Sequence
- ATGGAACCTAGTGGTTTATTTAACTGTGCCATCAGATTAAAAGAGCCTAGTGAAGCGTggattattaataatgaatgtGAAATGATCGAAGAAAAACCAGATCTTAAAAACTTCCAACCTTTACCATTTTCGCCAGAAAATGCCACCGATACGCTTCAAAAATGTGACGTAAATCATAAAAGTGAAATCTACAACGACGTGAAAATAGTATTTGAATGTGAAGATGTGAAGCCTAGAAAGGATTTATTAGTAGCTAAAAAAGttgatgatgattttgaaTATCATTTGCAGAATGTACAACATGATGATGGTTATAAAACTCAAAACACAATTAAAATGGAACTCGTGGAGGAAGTGAAGCAGGAATTTGTTGGTAACGTAGTAGAAGAATTGAGTTTGAATTTCAACAGTGAACTGAACAAGCAAAATCGTAGGAGAAAAACCACAAAAAAGTGTAACAacgaacataacctcaaaacgcACAATGGTACTGTACATAATCATACGATCCGCGATGGAGAGAAATGTGCAAACAGTAGTAATCTGAGTAGCCACGTCAAAGAATTACATCATTGCATTACTCACGCATGTCCTAtatgcggcaagacattttcacaaaaaagtatTCTGAAAATCCACATTGATACAGTGCACAAAGGTGTCAAACATGTATGTGATACGTGTGGAAAgtcattcacacaaaaaggctctctcaaaatccacatcgatacAGTACACAAAGGTGACAAATATGCATGTGAtgtatgtggaaagacattcacacaaaaaagtaGTCTCAGGACCCACGTCGATACGGTGCATATAGGTACTAAACATGCATGTGATgtgtgtgaaaagaaattctcatATAAGAAAAATCTCAAAGAACACATTGATATGGTGCACAAAGGTGTAAAACATGCATGTGATGCGTGTGAAATGAAATTCTCGTACAAGAGTGttctaaaaaatcatattgatACAATGCACAAAGGTGtcaaacatgcatgtgatGTGTGTAATAAGTCATTCACACTAAATAGcaatctcaaaacccacatcggTACAGTGCACAAAGGTGTCAAACATGTATGTGATATGTGTGGAAAGTCATTCACCCAAACAAGCcatctcaaaacccacatcggTACAGTGCACAAAGGTGTCAAACATGTATGTGATATGTGTGGAAAGTCATTCACCCAAACAAGccatctcaaaatccacatcgatgcgGTGCACAAGGATGtcaaacatgcatgtgatGCGTGTGCAATGAAATTCTCGTACAAGAGCAGTCTAAAAACCCACATCGATGAAGTTCACAATGGTGTATCTCATGTATGTAATGTGTGTGGAAAGTCATTCACACTAAAGAGCAgtctcaaaacccacatcgataCAGTACACAATGGTGTATCTCATGTATGCGATGtgtgtgaaaagacattcacacaaaaaggctatctcaaaatccacattgaTGCAGTGCACAAAGGTGTTAAACATGTATGTGATATGTGTGGAAAGCCATTCACACTAAAAAgacatctcaaaatccacatcgatacAGTGCACAAAGGTGTCAAACATGTATGTGATATGTGTGGAAAATCATTCACACTAAAACGCagtctcaaaatccacatcgatacAGTACACAAGGGCGTATCTCATGTATGTGATGTGTGTGAAAAAACATTCTCATATAAGTGTAATCTCGCAAAACACATTGATACAATGCACAAAGGTATCTAA
- Protein Sequence
- MEPSGLFNCAIRLKEPSEAWIINNECEMIEEKPDLKNFQPLPFSPENATDTLQKCDVNHKSEIYNDVKIVFECEDVKPRKDLLVAKKVDDDFEYHLQNVQHDDGYKTQNTIKMELVEEVKQEFVGNVVEELSLNFNSELNKQNRRRKTTKKCNNEHNLKTHNGTVHNHTIRDGEKCANSSNLSSHVKELHHCITHACPICGKTFSQKSILKIHIDTVHKGVKHVCDTCGKSFTQKGSLKIHIDTVHKGDKYACDVCGKTFTQKSSLRTHVDTVHIGTKHACDVCEKKFSYKKNLKEHIDMVHKGVKHACDACEMKFSYKSVLKNHIDTMHKGVKHACDVCNKSFTLNSNLKTHIGTVHKGVKHVCDMCGKSFTQTSHLKTHIGTVHKGVKHVCDMCGKSFTQTSHLKIHIDAVHKDVKHACDACAMKFSYKSSLKTHIDEVHNGVSHVCNVCGKSFTLKSSLKTHIDTVHNGVSHVCDVCEKTFTQKGYLKIHIDAVHKGVKHVCDMCGKPFTLKRHLKIHIDTVHKGVKHVCDMCGKSFTLKRSLKIHIDTVHKGVSHVCDVCEKTFSYKCNLAKHIDTMHKGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -