Tpre000646.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1006224-1011925[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00039 0.0063 16.4 0.1 1 23 30 53 30 53 0.96 2 19 6.2e-05 0.001 18.9 1.8 1 23 88 111 88 111 0.96 3 19 0.00022 0.0037 17.2 3.3 1 23 117 140 117 140 0.95 4 19 0.0024 0.04 13.9 1.0 1 23 146 169 146 169 0.95 5 19 6.8e-05 0.0011 18.8 1.7 1 23 175 198 175 198 0.97 6 19 1.4e-05 0.00022 21.0 2.6 1 23 233 256 233 256 0.98 7 19 0.001 0.016 15.1 0.2 1 23 262 285 262 285 0.96 8 19 1.3e-05 0.00021 21.1 2.0 1 23 291 314 291 314 0.98 9 19 0.003 0.049 13.6 3.1 1 23 320 343 320 343 0.96 10 19 2.5e-05 0.00042 20.1 1.2 1 23 349 372 349 372 0.97 11 19 0.012 0.2 11.7 2.7 1 23 378 401 378 401 0.97 12 19 0.00047 0.0077 16.1 1.3 1 23 407 430 407 430 0.97 13 19 0.0035 0.057 13.4 3.4 1 23 436 459 436 459 0.98 14 19 1e-05 0.00016 21.4 2.8 1 23 465 488 465 488 0.96 15 19 2.8e-05 0.00046 20.0 2.8 1 23 494 517 494 517 0.96 16 19 7.6e-05 0.0012 18.6 1.7 1 23 523 546 523 546 0.96 17 19 1.2e-05 0.00019 21.2 1.3 1 23 552 575 552 575 0.98 18 19 0.00011 0.0018 18.1 3.1 1 23 581 604 581 604 0.96 19 19 5.2e-05 0.00084 19.2 1.9 1 23 610 633 610 633 0.98
Sequence Information
- Coding Sequence
- atggataaaagtgaaaagaaatccAAGGAAGTTGTCTCAAGAGACAATTTAAGCGAACACGACATTGCTGTTTCagatgacaaaaaatatgtttgtgatatttgtcaagaAGCATTTACACAAGAATCAAGCATAACAGCACATAGAGACAAAATTcacaaagaacaaaaattttttgcttgtAACAAGTCTGAAGAagaatttgagttccgaagtcatttgagccGACACCATATATCATCacacaaaagccgcaaagatttttcatgtgaccagtgcgagaaaaaatttgtaaaaaaatcgagtttgtctacgcaccaaaaattagtacacaaaaatcgaaaagatttctcatgcaaaaagtgcgagaaaaattttgaaaataaatcaacgttacttaagcacaataagatattccacgaagtttttaaatcTTTCTTATGTGAGAAatgtgcgaagagatttggaaataaacagagtttgtttttacatgtaaaaacagtacacgatgaTGGGAGAGATTTCGCTTGCGATaggtgtgaaaaaaaatttggacaaaaatcggaatttttaaagcaccaaaggagagtacacgaaggtctgaaaaatttgacGTGTGACATTTTAAAGCAGAAATTGGGACATAAGTCCAATTTCCTcttttatcaaaatacaatttacaaaagtcgcaaagattatgaatgcgacaaatgccagaaggaatttggaaaaaaatcacatttgcttttgcaccagaGGACCGTACACGACCGtttcaaagattatgcatgcgacaagtgtgaaaataaatttggacaaaaatcgactttgcgtGTGCACGTAGCCACAGTCCATGagagtcgcaaagattatccatgcgacaagtgcgagaagatatttggacaaaaacaacatttgctccgccaccaaaaaacagtacacgagggtcgtaaagattacaaatgtgacaagtgtgagaaaaaatttggaacgAAACAGCATGTTCTTTACCACCAAAAagcagttcatgaaggtcgccaagattacgcatgcgacaagtgtgaaaggAAATTTGGAAAACGAGGAAATCTtattagacaccaaaaaacaaccCACGAAAATCGTAAGGATTAtaaatgcgacaagtgtgagaagaaatttggacataaatggATTCTGATTAAACACAACAAGACAgtgcatgaaggtcgcaaagattatgcatgcgaccagtgtgATAGTAAATTTGGACAGAAACACAATTTGCTCGACCATCTGAAAACAGTGCACGAAAGCCGTAAAGATTTCACCTGCGACAAGTGTAGAAGGAAATTTGGAAGTCAAAGAAGTATGATGAGACACTTTAAaacaattcatgaaggtcaAAAGAATCatgaatgcgacaagtgcgagaaaaaatttagacaaaaGTCAGATTTGATCAGACATGAAAAGATAACCCATGAAGattgcaaagattatgcatgcgatcagtgtggaaaaaaatttggtcataaatcagatttgtttaaacacaaaacgacagttcacgaagatcgcaaagatcacgcgtgcgataagtgtgaaaagaaatttggagaacgaggcaatttgatgagacaccaaaagacagtacatgatgatcgtaaagattttgaatgcaacaagtgcgaaaaaaaattcagtctGAAATGGAATTTATTGAATcaccaaaatacagttcacgatggtcgcaaagattacgcgtgtgatcattgcgagcgaaaatttgcaaaaaaatcgaatttgctctcCCATCAACAtgtagtccacgaaggtcgtaaagattatgaatgtgacgagtgcgagaaaaaattcggtcACAAATATACGTTGCTTCTACACCAacagacagtccacgaagacGAACAATTTTga
- Protein Sequence
- MDKSEKKSKEVVSRDNLSEHDIAVSDDKKYVCDICQEAFTQESSITAHRDKIHKEQKFFACNKSEEEFEFRSHLSRHHISSHKSRKDFSCDQCEKKFVKKSSLSTHQKLVHKNRKDFSCKKCEKNFENKSTLLKHNKIFHEVFKSFLCEKCAKRFGNKQSLFLHVKTVHDDGRDFACDRCEKKFGQKSEFLKHQRRVHEGLKNLTCDILKQKLGHKSNFLFYQNTIYKSRKDYECDKCQKEFGKKSHLLLHQRTVHDRFKDYACDKCENKFGQKSTLRVHVATVHESRKDYPCDKCEKIFGQKQHLLRHQKTVHEGRKDYKCDKCEKKFGTKQHVLYHQKAVHEGRQDYACDKCERKFGKRGNLIRHQKTTHENRKDYKCDKCEKKFGHKWILIKHNKTVHEGRKDYACDQCDSKFGQKHNLLDHLKTVHESRKDFTCDKCRRKFGSQRSMMRHFKTIHEGQKNHECDKCEKKFRQKSDLIRHEKITHEDCKDYACDQCGKKFGHKSDLFKHKTTVHEDRKDHACDKCEKKFGERGNLMRHQKTVHDDRKDFECNKCEKKFSLKWNLLNHQNTVHDGRKDYACDHCERKFAKKSNLLSHQHVVHEGRKDYECDECEKKFGHKYTLLLHQQTVHEDEQF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -