Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:274916-277533[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00011 0.0018 18.1 2.6 1 23 56 79 56 79 0.94

2 18 0.27 4.4 7.5 0.4 8 23 92 108 87 108 0.92

3 18 0.00014 0.0022 17.8 3.6 1 23 114 137 114 137 0.97

4 18 0.0013 0.021 14.7 2.2 1 23 143 166 143 166 0.96

5 18 6.9e-07 1.1e-05 25.1 1.4 1 23 201 224 201 224 0.98

6 18 0.00025 0.004 17.0 0.5 1 23 230 253 230 253 0.97

7 18 1.8e-05 0.00029 20.6 1.2 1 23 259 282 259 282 0.97

8 18 7e-05 0.0011 18.8 0.2 1 23 288 311 288 311 0.97

9 18 0.00022 0.0036 17.2 1.6 1 23 317 340 317 340 0.97

10 18 8.8e-05 0.0014 18.4 0.7 3 23 348 369 346 369 0.97

11 18 0.0011 0.018 15.0 1.4 1 23 375 398 375 398 0.94

12 18 8.4e-06 0.00014 21.6 0.6 1 23 404 427 404 427 0.98

13 18 9.3e-05 0.0015 18.4 0.3 1 23 433 456 433 456 0.95

14 18 1.4e-05 0.00023 20.9 1.8 1 23 462 485 462 485 0.95

15 18 2.2e-05 0.00036 20.3 2.3 1 23 491 514 491 514 0.96

16 18 0.021 0.34 10.9 0.3 1 23 520 543 520 543 0.97

17 18 5e-06 8.2e-05 22.4 2.4 1 23 549 572 549 572 0.97

18 18 0.00025 0.004 17.0 1.3 1 23 578 601 578 601 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00011	0.0018	18.1	2.6	1	23	56	79	56	79	0.94
2	18	0.27	4.4	7.5	0.4	8	23	92	108	87	108	0.92
3	18	0.00014	0.0022	17.8	3.6	1	23	114	137	114	137	0.97
4	18	0.0013	0.021	14.7	2.2	1	23	143	166	143	166	0.96
5	18	6.9e-07	1.1e-05	25.1	1.4	1	23	201	224	201	224	0.98
6	18	0.00025	0.004	17.0	0.5	1	23	230	253	230	253	0.97
7	18	1.8e-05	0.00029	20.6	1.2	1	23	259	282	259	282	0.97
8	18	7e-05	0.0011	18.8	0.2	1	23	288	311	288	311	0.97
9	18	0.00022	0.0036	17.2	1.6	1	23	317	340	317	340	0.97
10	18	8.8e-05	0.0014	18.4	0.7	3	23	348	369	346	369	0.97
11	18	0.0011	0.018	15.0	1.4	1	23	375	398	375	398	0.94
12	18	8.4e-06	0.00014	21.6	0.6	1	23	404	427	404	427	0.98
13	18	9.3e-05	0.0015	18.4	0.3	1	23	433	456	433	456	0.95
14	18	1.4e-05	0.00023	20.9	1.8	1	23	462	485	462	485	0.95
15	18	2.2e-05	0.00036	20.3	2.3	1	23	491	514	491	514	0.96
16	18	0.021	0.34	10.9	0.3	1	23	520	543	520	543	0.97
17	18	5e-06	8.2e-05	22.4	2.4	1	23	549	572	549	572	0.97
18	18	0.00025	0.004	17.0	1.3	1	23	578	601	578	601	0.98

Sequence Information

Coding Sequence: atgaataaaaatgagaagaaaTCCGAAGAAGTTgtcttggaaaataatttaagtgaactcgacattgttgtttcggACGACAAACAAAATGTAgatgatatttgtcaggaggcatttacgcTTGAATCGAGCACGAAAATATACCAAGACacaactcaaaaaaatttcgcctgtgacaagtgcgaaaagacatttgattttcgaagtcatttgagtagacaccaagtatcagaacacaaaagccgcgaagattttgcatgtaacaagagtgagaaaaaatttgtgaaaaaatcaagtttgtttgcgcatcaaaaattagtacacagagatcgcaaagatttctcttgcaacaagtgcgagaggaaatttgaaaataaatcaactttactgaagcacaaaaaaattttccacgaagttttcaaagattacttatgtgaacagtgcgcaaagagatttggaaataagaGAAGTTTGtgcttgcacataaagacggtacacgacggtcgtaaagattttacCTGTCATAAGCGTGAGAAggaatttagagaaaaattagattCGATCACCCGCCAAAATATAATCCATGATAGTTGTAAAGATTATAAATGTGATGATTGTGGgaagatatttgaaaataaatcgagtttgcacttgcaccaaaagataatccatgaaggtcggagagatttcatatgtgacaagtgcgagaagaaatttggagaaaaatggaaattaattagacaccaaaaaatagtccacgaaggtttcacagattacgaatgtgacaaatgcgagaagaaatttaaagaaaaatcgaaattaattaGACAcgaaaaaatagtccacgaaggtctcaaaaattacgtatgcgacaagtgtgaaaagaagtTTGGAGAAAAAGGGAATTTGCTTatccatcaaaaaatagtacacgaaggtcaaaaagatttcgcatgtgacaagtgcgagactaaatttggacaaaaagtacatttgcttttgcaccaaagaacagtacatgaaggtcgcaaagattacggatgtgacaaatgtgataagaaatttggacgtaaatGGCTTTTGCTTTCCCACCAgaaaacagtacacgagggtcaaaaagattacttGTGCGAAAtatgcaagaagaaatttggttATAAACAGTATTTGTTCTCCCACCAAAaagcagtccacgaaggttgcaaagattacgaatgcaacaattgcgagatgaaatttggacaaagGTCAGCTCTGTTAagacaccaaagaacagtacacgaaggacgtaaaaattatgcatgcgacatttgtgaaaagaaattcggggAAACAAGTAATTTGAAACAACACCAAAAAGCAGTccatgaaagtcgcaaagattacgcatgcaataagtgtgaaaagaaatttgggaatcGAAGCAATTTTAACAAACACCAAAAggcagtacatgaaggtcgaaaagatttcgcatgcgacaagtgcgaaaaaaaatttggacgaaagtcgcatttgctctcccaccaaaaaatagtacatgaaggtcattatgatttcgcatgtgacaagtgcgaaaataaatttggatGGAAATCACAATTGATtgtgcaccaaaagacaatacatgaaggtcgcataGATTTCGCATGTAGCAATTGTGGGCAGAAATTTAGTCACAAATCGAGTTTAATTATgcatcaaaagacaatccatgagggtcgtaaagattatgtatgtgaCCAGTGTGAGAAGAAGTTTACACAAAAATTGGGTTTActctaccaccaaaagaaAATACACGAAGGACGCAAGGATTAA
Protein Sequence: MNKNEKKSEEVVLENNLSELDIVVSDDKQNVDDICQEAFTLESSTKIYQDTTQKNFACDKCEKTFDFRSHLSRHQVSEHKSREDFACNKSEKKFVKKSSLFAHQKLVHRDRKDFSCNKCERKFENKSTLLKHKKIFHEVFKDYLCEQCAKRFGNKRSLCLHIKTVHDGRKDFTCHKREKEFREKLDSITRQNIIHDSCKDYKCDDCGKIFENKSSLHLHQKIIHEGRRDFICDKCEKKFGEKWKLIRHQKIVHEGFTDYECDKCEKKFKEKSKLIRHEKIVHEGLKNYVCDKCEKKFGEKGNLLIHQKIVHEGQKDFACDKCETKFGQKVHLLLHQRTVHEGRKDYGCDKCDKKFGRKWLLLSHQKTVHEGQKDYLCEICKKKFGYKQYLFSHQKAVHEGCKDYECNNCEMKFGQRSALLRHQRTVHEGRKNYACDICEKKFGETSNLKQHQKAVHESRKDYACNKCEKKFGNRSNFNKHQKAVHEGRKDFACDKCEKKFGRKSHLLSHQKIVHEGHYDFACDKCENKFGWKSQLIVHQKTIHEGRIDFACSNCGQKFSHKSSLIMHQKTIHEGRKDYVCDQCEKKFTQKLGLLYHQKKIHEGRKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -