Tpre007782.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:74532-77264[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00069 0.011 15.6 0.3 1 23 8 31 8 31 0.97 2 17 9.1e-05 0.0015 18.4 2.7 1 23 37 60 37 60 0.96 3 17 0.00036 0.0058 16.5 1.4 1 23 66 89 66 89 0.95 4 17 0.00023 0.0038 17.1 3.3 2 23 96 118 95 118 0.95 5 17 4.6e-05 0.00074 19.3 2.4 1 23 124 147 124 147 0.96 6 17 0.071 1.2 9.3 0.1 7 23 167 184 163 184 0.95 7 17 4.5e-05 0.00074 19.3 0.7 1 23 190 213 190 213 0.97 8 17 0.00014 0.0024 17.8 1.7 3 23 221 242 219 242 0.97 9 17 4.7e-05 0.00077 19.3 1.9 1 23 248 271 248 271 0.96 10 17 1.3e-05 0.00021 21.0 0.2 1 23 277 300 277 300 0.97 11 17 5.4e-05 0.00088 19.1 1.2 1 23 306 329 306 329 0.97 12 17 1.9e-05 0.0003 20.6 0.5 1 23 335 358 335 358 0.97 13 17 5.3e-06 8.6e-05 22.3 0.2 1 23 364 387 364 387 0.97 14 17 2.2e-05 0.00036 20.3 1.7 1 23 393 416 393 416 0.97 15 17 3.7e-05 0.00061 19.6 0.2 3 23 424 445 423 445 0.95 16 17 1.2e-05 0.00019 21.2 2.8 1 23 451 474 451 474 0.97 17 17 2.7e-05 0.00044 20.0 2.0 1 23 480 503 480 503 0.97
Sequence Information
- Coding Sequence
- atggataaaaacgacgaaaagtacgtttgtgatatttgccacgaggcatttacattagaatcaagtatgatcgcacaccgagacacaactCACAATGAGGGaagagatttcgcatgtgacaagtgcgaaaagaaattcgagttccgaagtcatttaagtagacaccaaatatcggtacacaaaggccgcaaagattttgcatgcgaccagtgcgagaagaaatttatgaaacaatcgagtttatttatgcatcaaaaattagtccaCAAAAGTCGCGAGGATTTGACGTGCaaaaagtgcgagagaaaatttgaaaataaatcaactttactcaagcacaaaaaaatattccacgaagtattccgagattatttatgtgaaaagtgtgcgaagagatttgaaACTAAACACAGTTTGATCaagcacataaagacagtgcACGAGGGTCAAAAAGATTTCACCGTCAAAGTCtttaaagattacttatgtaaCAACTCTGGAAAGGAATTTGCAAATAAGCGAAATTTAGTCTTGCACATGACAACAGCCCATGggggtcgtaaagattatgcatgcgacaaatgcgagagtacatttggacaaaaatcgaatttgcttacgcaccaaaagacagtacacgaaagtcAGAAAGATatcgcatgcgataaatgcgaaaagaaatttggacaaaaatcgactttacttttgcaccacaggacagtacacgaaaatcgtaaagattacACCTGCGTTAAGTGCGAAAAAACATTTGGACATAAAAGTACATTAATTTCGCACCAAAAGGCAGTCCATgatggtcgtaaagattacgcatgcgacaagtgcgagaagaaatttgcaagACAACCCGATTTGATCgggcaccaaagaacagtacacAAAGGTCAGAAAAATTTCGCGTGTGAcgtgtgcgagaaaaaatttggacaaaaacccCATTTGCTAACCCATCAAAagactgtacacgaaggtcgcaaagattacgcgtgtgacaaatgcgaaaaaaaattcggagtCAAAAGTAATTTACTCGCCCACCGAAAGacaattcatgaaggtcgcaaagattacgcatgcgacaagtgcgagaaggtATTTGGAACATCAATAGATTTGACTagacaccaaaatacagtacatgatggtcgaaaagattatgcatgcgataggtgcgagaaaaagtttggacGACAAAGTGCTTTAATCAGACACCataagacaatacacgaaggtcgcaaagattctGCATGTAATTattgcgggaaaaaattcgtaaataGTCTTAATTTGCTCTCACATATAACAATTGTCCAccaaggtcgcaaagatttcgcatgtaacaagtgcgaaaagaaatttggacataaatcgagtttgctcgttcaccaaaggacactccatgaaggtcggaaagatttcacgtgtgacaagtgtgaaaagaaatttacacaaaaaccgagtCTGCTTTACCACCAAAGGAATGTACACGACGGTCGCAAGTTtgacgcatgtgacaaatga
- Protein Sequence
- MDKNDEKYVCDICHEAFTLESSMIAHRDTTHNEGRDFACDKCEKKFEFRSHLSRHQISVHKGRKDFACDQCEKKFMKQSSLFMHQKLVHKSREDLTCKKCERKFENKSTLLKHKKIFHEVFRDYLCEKCAKRFETKHSLIKHIKTVHEGQKDFTVKVFKDYLCNNSGKEFANKRNLVLHMTTAHGGRKDYACDKCESTFGQKSNLLTHQKTVHESQKDIACDKCEKKFGQKSTLLLHHRTVHENRKDYTCVKCEKTFGHKSTLISHQKAVHDGRKDYACDKCEKKFARQPDLIGHQRTVHKGQKNFACDVCEKKFGQKPHLLTHQKTVHEGRKDYACDKCEKKFGVKSNLLAHRKTIHEGRKDYACDKCEKVFGTSIDLTRHQNTVHDGRKDYACDRCEKKFGRQSALIRHHKTIHEGRKDSACNYCGKKFVNSLNLLSHITIVHQGRKDFACNKCEKKFGHKSSLLVHQRTLHEGRKDFTCDKCEKKFTQKPSLLYHQRNVHDGRKFDACDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -