Tpre001874.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:500157-502376[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0001 0.0017 18.2 0.8 2 23 186 208 185 208 0.95 2 14 2.4e-07 3.9e-06 26.5 0.2 1 23 213 236 213 236 0.96 3 14 1.1e-07 1.7e-06 27.6 0.2 1 23 241 264 241 264 0.97 4 14 4.8e-05 0.00079 19.3 1.8 3 23 271 292 270 292 0.93 5 14 3e-07 4.8e-06 26.2 0.8 1 23 297 320 297 320 0.95 6 14 1.2e-05 0.00019 21.2 0.3 1 23 325 348 325 348 0.96 7 14 3.8e-07 6.2e-06 25.9 0.2 1 23 353 376 353 376 0.96 8 14 8e-06 0.00013 21.7 1.5 1 23 381 404 381 404 0.96 9 14 8.8e-06 0.00014 21.6 0.6 1 23 409 432 409 432 0.97 10 14 1e-06 1.6e-05 24.5 2.5 1 23 437 460 437 460 0.95 11 14 0.0023 0.037 14.0 2.2 1 23 465 488 465 488 0.94 12 14 4.3e-05 0.00071 19.4 0.3 1 23 493 516 493 516 0.92 13 14 0.0072 0.12 12.4 1.1 1 23 521 544 521 544 0.95 14 14 1.9e-06 3e-05 23.7 4.3 1 23 549 572 549 572 0.92
Sequence Information
- Coding Sequence
- atggAGTCTAATGGTCCATTCAACTTTGCTGTCGAAGTAAAAGAATCTAATGATGGGTACCATAACGAAAATGCCTATAATGATACGAGAGATCAAGCGTTCGATActgaaaattcgaaatatgCGCAAGTAAATTCCATTCACACACTTGAAGAATACAGTGGAATGAATAATATTCAACTTAACGAAGAAGCCAAAGTAGAGTTTGAGTGCAGTTTATTAGTACCTGGTAAAGTGAACGAAGAAACTCATAAATTTCAACAACCTAAccaagaaatgaaaatagaaTTGGCGTACCCGGATGTGAAAACCGATGTGAATTTATCAGTGTCCGATGAAGCAAACGATTGGTCTCATCGGTCTGATCAATATGAAGATGTTAAAATTAGCGATGATTTTGCATCACATTCCTCGATTCAAATTGAAACTGAGGAAATAGTCAAGAAAAGGTTTCTTAGTGATACTCAGAAAACTATAGATTCAAATACTGGAGGCCAACTCAACGgacagaaaatgaaaatgtgtcCTCtagtaaagaaaagaaaacaatctATGCAATGCAAGttgtgtttgaaaaaattttcttcaaaacaaAGTCTGGAAAGACATATTGATATAGTGCATAAGTGTATCTCTTACCCTTGTAATGATTGTGGAAAGGCATTTAAAAGCAAAGATTATCTCAAGGTACAtattgattcagtgcataaaTGTATCTCTTACCCTTGTGATGATTGTGGAAAGGCATTTAAAAGCAAAGATTATCTCAAGGTACATATTAattcagtgcataatcgtATCTCTAATCCATGTCACACTTGTGGAAAGTTATTTAAAACCAAAGCTTCTCTTAAGAAACATATTGATCTAATGCATAACTGTATCTCTTAcaattgtgatatttgtggaaagacatttaaAAGCAAAACTTCTCTTAAGAAACATATTGTTGTAATGCATAACTGTATCTCTTAcaattgtgatatttgtggaaagacattaAAAAGCAAAACTTCTCTTAAGGTACATATTGATATGGTGCATAATTGTACCTCTTACCCTTGTGATGATTGTGGAAAGGCATTTAAAAGCAAATATTATCTCAAGGTACAtattgattcagtgcataatagTATCTATTATCCATGTCACACTTGTGGAAAGTTATTTAAAACCAAACCTTCTCTTAAGAAACATATTGATGTAATGCATAACGGTATCTCTTACGATTGTGATGATTGTGAAAAGTCATATGAACACAGAAGTTCTCTAATGGCCCACATTAattcagtgcataatcgtGTCAACTACCACTGTCAAacttgtggaaagacatttaaACGAAAGGATAATCTCAAAGCCCATGTTGATTCAGAACACAGAGgtcgaaaatattattgcgATATATGCTTGAAGtcatataaacataaaatgtCTTTAATAACCCATACTGTTTCAATGCATAATTGTATTACATACCTATGTTATACGTGTGGAAAGAGATTTACACAAAAGGGTGCTCTCACAGCCCACGTTGATTCAGAACACAGTGgtcgaaaatattattgcgATATATGCTTGAagtcatataaaaaaaaaaagtctataATGACCCACATTGTTTCGATGCATAATTGTATTACATACCCATGTCACACGTGTGGAAAGAGATTTAAACATGAAAGTAATCTGAAACGTCATATCGATTTTGAGCATATTACTATTTTCCCGTGTGACATTGTAGAAAAACGTTCACGTAAAAGGCAATTGTGA
- Protein Sequence
- MESNGPFNFAVEVKESNDGYHNENAYNDTRDQAFDTENSKYAQVNSIHTLEEYSGMNNIQLNEEAKVEFECSLLVPGKVNEETHKFQQPNQEMKIELAYPDVKTDVNLSVSDEANDWSHRSDQYEDVKISDDFASHSSIQIETEEIVKKRFLSDTQKTIDSNTGGQLNGQKMKMCPLVKKRKQSMQCKLCLKKFSSKQSLERHIDIVHKCISYPCNDCGKAFKSKDYLKVHIDSVHKCISYPCDDCGKAFKSKDYLKVHINSVHNRISNPCHTCGKLFKTKASLKKHIDLMHNCISYNCDICGKTFKSKTSLKKHIVVMHNCISYNCDICGKTLKSKTSLKVHIDMVHNCTSYPCDDCGKAFKSKYYLKVHIDSVHNSIYYPCHTCGKLFKTKPSLKKHIDVMHNGISYDCDDCEKSYEHRSSLMAHINSVHNRVNYHCQTCGKTFKRKDNLKAHVDSEHRGRKYYCDICLKSYKHKMSLITHTVSMHNCITYLCYTCGKRFTQKGALTAHVDSEHSGRKYYCDICLKSYKKKKSIMTHIVSMHNCITYPCHTCGKRFKHESNLKRHIDFEHITIFPCDIVEKRSRKRQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -