Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:618605-621183[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.015 0.25 11.4 1.1 2 23 126 150 125 150 0.94

2 17 0.2 3.3 7.9 2.1 1 23 156 179 156 179 0.81

3 17 1.1e-05 0.00018 21.3 1.5 1 23 185 208 185 208 0.98

4 17 0.00012 0.0019 18.1 2.7 1 23 214 237 214 237 0.97

5 17 1.3e-05 0.00021 21.0 0.7 1 23 243 266 243 266 0.95

6 17 1.1e-06 1.8e-05 24.4 1.3 1 23 272 295 272 295 0.95

7 17 1.5e-06 2.5e-05 24.0 1.3 1 23 301 324 301 324 0.97

8 17 4.7e-05 0.00077 19.3 1.0 1 23 330 353 330 353 0.97

9 17 1.4e-05 0.00023 21.0 1.6 1 23 359 382 359 382 0.93

10 17 7.1e-05 0.0012 18.7 1.8 1 23 388 411 388 411 0.97

11 17 8.7e-07 1.4e-05 24.7 1.0 1 23 417 440 417 440 0.97

12 17 6.2e-06 0.0001 22.0 2.5 1 23 446 469 446 469 0.97

13 17 3.6e-06 5.8e-05 22.8 1.5 1 23 475 498 475 498 0.96

14 17 7.1e-06 0.00012 21.9 1.8 1 23 504 527 504 527 0.96

15 17 8.8e-06 0.00014 21.6 1.7 1 23 533 556 533 556 0.97

16 17 0.00089 0.015 15.3 3.0 1 23 562 585 562 585 0.97

17 17 6.5e-06 0.00011 22.0 1.7 1 23 591 614 591 614 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.015	0.25	11.4	1.1	2	23	126	150	125	150	0.94
2	17	0.2	3.3	7.9	2.1	1	23	156	179	156	179	0.81
3	17	1.1e-05	0.00018	21.3	1.5	1	23	185	208	185	208	0.98
4	17	0.00012	0.0019	18.1	2.7	1	23	214	237	214	237	0.97
5	17	1.3e-05	0.00021	21.0	0.7	1	23	243	266	243	266	0.95
6	17	1.1e-06	1.8e-05	24.4	1.3	1	23	272	295	272	295	0.95
7	17	1.5e-06	2.5e-05	24.0	1.3	1	23	301	324	301	324	0.97
8	17	4.7e-05	0.00077	19.3	1.0	1	23	330	353	330	353	0.97
9	17	1.4e-05	0.00023	21.0	1.6	1	23	359	382	359	382	0.93
10	17	7.1e-05	0.0012	18.7	1.8	1	23	388	411	388	411	0.97
11	17	8.7e-07	1.4e-05	24.7	1.0	1	23	417	440	417	440	0.97
12	17	6.2e-06	0.0001	22.0	2.5	1	23	446	469	446	469	0.97
13	17	3.6e-06	5.8e-05	22.8	1.5	1	23	475	498	475	498	0.96
14	17	7.1e-06	0.00012	21.9	1.8	1	23	504	527	504	527	0.96
15	17	8.8e-06	0.00014	21.6	1.7	1	23	533	556	533	556	0.97
16	17	0.00089	0.015	15.3	3.0	1	23	562	585	562	585	0.97
17	17	6.5e-06	0.00011	22.0	1.7	1	23	591	614	591	614	0.97

Sequence Information

Coding Sequence: ATGGAAGGCAACAGTGACGTAGTtagggtgaaggaagaaCCGAGCAATACTTGGATGGACGCAGGTGACGATATTGCTTTCGGTTCGATGGTTACTTGCAAAGTCGAAAACTCCGAAACATCGCCCTTTCTCGAATTTCCGGCAAAACAAGCGAATGAGCCCGTCGTTAAAACAGAGAGGttagaggaaaaaatatttatcgatttgGAATGCAAGAATGTTAAGCCAgaactttctcttttatcTACTACTACCTTCAAAACTGAGTTAGAAAATGTTCAACCAGTTGGGAAAGAAGGAAATGAAAATCGTCGTTTAAAGCTACCCGAAAATGAAGACCTGAAACGTTTTGAAGAAACTGCCGGGAAAGAATTATCGTGCAAGTCAAAAATGTGTCGAAAACCTTATACAGCAAGAGCGAGTCTAAAAAAACATACGAATACGATTCATAAAAGAATTAGACTGTATAAATGTGAGATATGCAATGAATCATTTTCCTGCGATACAGACCGCAAAATTCACTTAAAACAGGTACATGATCGGAAcaaacctttcgagtgtgaaatttgtcacaaatcatacAGAGCCAAGGGTTACcttaaaaatcacataaatacTGTACACAATGGTATCaaatccttcgaatgtgaggtgtgtcataaattatttggTCAAAAAGCTCACCTCAATGTTCACATAAAATCAAGACACGATCGGAGTAAACCCttcaaatgtgatatttgtcagaaatcattttcaattaagaGTAATCTCTATGTGCACACAAATGCAGTTCATGAATTTagaaaacccttcgaatgtaagATTTGCCCTAAAACATTTGGACACAAGTATGATCTGAAAAAGCACATAAATGCAGCACATGATCCAAGCAATctcttcgaatgtgatatttgtcgcaaatcatttggacaccGTAGTAATCTCAATGTTCACATAAAATCTGTACATGATCgaatcaaaccctttgaatgtgagatttgccataaatcatttggatacaagagtGTACTCGATAGACACATAAATGTAtcacatgatcgtagcaaatcatttgaatgtgagatttgtcacaaatcatttggacataaaCCAAACCTCAATAGACACGtaagtgcagtacatgatcgaatcaaaccctttgaatgtgagatttgccatAAATATTTTGGATACAAGAGTACACTCGATAGACACATAAATGTAtcacatgatcgtagcaaatcatttgaatgtgagatttgtcacaaatcattcgcAGAAAATAGTTacctcaaaaaacacataaatgtAATACATGATAAGAttaaacccttcgagtgtgacatttgtcataaatcatttggacaacgTAGTAATTTCAATCAACACACAAAaatagtacatgatcgtagtaaaccctttgaatgtgagatttgtcataaatcatttggagaaaagagTTACCTCAAAAGACACATTAATTTAATACATGATAAGAttaaacccttcgagtgtgaaatttgtcataaatcatttggacataaaCCAAACCTCAATAGACACGTAAgtgtagtacatgatcgtagtaaaccctttgaatgtgagatttgtcacaaatcatttggagaaaaaggtcACCTCAATGTTCACATAAAatcagtacatgatcgtatcaaaccctttgaatgtgagatttgtcataaatcatttggttGTCAGAGTAAACTTGAAAGACACGTGAAAATAGTACACGATCGAAGCCCGCgcttcgaatgtgacatttgtcacaagtcatATGGTCGCAGAGATAACCTTAAATCTCACATAACGAAAGCACACGCTTTTATTGTGATATAG
Protein Sequence: MEGNSDVVRVKEEPSNTWMDAGDDIAFGSMVTCKVENSETSPFLEFPAKQANEPVVKTERLEEKIFIDLECKNVKPELSLLSTTTFKTELENVQPVGKEGNENRRLKLPENEDLKRFEETAGKELSCKSKMCRKPYTARASLKKHTNTIHKRIRLYKCEICNESFSCDTDRKIHLKQVHDRNKPFECEICHKSYRAKGYLKNHINTVHNGIKSFECEVCHKLFGQKAHLNVHIKSRHDRSKPFKCDICQKSFSIKSNLYVHTNAVHEFRKPFECKICPKTFGHKYDLKKHINAAHDPSNLFECDICRKSFGHRSNLNVHIKSVHDRIKPFECEICHKSFGYKSVLDRHINVSHDRSKSFECEICHKSFGHKPNLNRHVSAVHDRIKPFECEICHKYFGYKSTLDRHINVSHDRSKSFECEICHKSFAENSYLKKHINVIHDKIKPFECDICHKSFGQRSNFNQHTKIVHDRSKPFECEICHKSFGEKSYLKRHINLIHDKIKPFECEICHKSFGHKPNLNRHVSVVHDRSKPFECEICHKSFGEKGHLNVHIKSVHDRIKPFECEICHKSFGCQSKLERHVKIVHDRSPRFECDICHKSYGRRDNLKSHITKAHAFIVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -