Tpre008348.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:563410-565823[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00021 0.0034 17.2 0.4 1 23 161 184 161 184 0.94 2 17 2.5e-06 4.1e-05 23.3 0.5 1 21 209 229 209 232 0.93 3 17 2.8e-06 4.5e-05 23.2 0.7 1 23 237 260 237 260 0.97 4 17 7.6e-05 0.0012 18.6 1.8 1 23 265 288 265 288 0.97 5 17 9.7e-07 1.6e-05 24.6 2.7 1 23 293 316 293 317 0.95 6 17 0.0039 0.063 13.3 0.7 1 23 321 344 321 344 0.91 7 17 6.2e-07 1e-05 25.2 0.1 1 23 349 372 349 372 0.95 8 17 0.001 0.017 15.1 0.6 1 23 377 400 377 400 0.94 9 17 2e-06 3.2e-05 23.6 0.1 1 23 405 428 405 428 0.97 10 17 1.9e-05 0.00032 20.5 0.6 1 23 433 456 433 456 0.89 11 17 1.6e-05 0.00026 20.8 0.7 1 23 461 484 461 484 0.90 12 17 0.0057 0.093 12.7 1.6 1 23 489 512 489 512 0.96 13 17 2.1e-05 0.00035 20.4 4.7 2 23 518 540 517 541 0.94 14 17 0.00015 0.0024 17.7 1.7 1 23 545 568 545 568 0.93 15 17 1.6e-06 2.6e-05 23.9 1.2 1 23 573 596 573 596 0.95 16 17 1.8e-05 0.00029 20.6 1.3 1 23 601 624 601 624 0.95 17 17 4e-05 0.00066 19.5 3.3 1 23 629 652 629 652 0.95
Sequence Information
- Coding Sequence
- ATGGAATCCAGTGACAATTGTCCTatcagagtgaaaaaGGAGCCTAGCGATGTGCCACTTTTTGAAAACGATAGTGAAATGATTGACGAGAAACCTGATATTAAGAATTTCCAACTCTTACCACATCTACAAGAAAATTCGACCCatttcattcgaaaatttgatgaaaatcaTGATGGTGAATTTGGTGACAAAGTGGAAATAATCGTTGAATGTGAAGACGTCAAGCCAAATATCAATTTACtacaagttgaaaaaattgacgatgatTCCAAAATAAAAGGTAGTGATTATGAAATTCGTAAAGCAATAAAATTCGAGATAGTGGGTAAAGTAAAACAAGAAGTCATTGACGACGATGCAGATGAATCGACTTGGAATTTCGACTctaaacagaaaaagaaaagaagaaatacgaaaaaaatgaacaaagatCATAACCTCAAATCACACATCGGTAAGGTGCACAATGATACAACTTACGCCTGTGaaatatgtgtaaaaaaattttcaaatataagaAGTCTTAAACGACACGTCAACGAAATGCATAATGGTTTCAAACATAAGTGCGAcggtaaaaaatgtaatcttaAAATCGATACGAAACGTAAAGGTATGACCCACGCATGTGATATGTGTGGAAAAACATTCGCAAATAGAAGCAATCTACTAAAACACATCAAGCCGATACATAATGGCATTGcttatgcatgtgatatttgcaaaAAGGCATTCTCAAGCAAGAATtatctcaaaacccacatcaATTCGATACATAATGGGGTGTTCCACACATGTGATTTTTGCGGAAAATCATTTGCTCAAAAAGTTAGACTCAAATATCACATAGATACGGTACATGATGGTGTCAAGCATACTTGTGATGTATGTGGGAAGACATTTTCAAACAAGAGTactctcaaaatccacatcgattcagtacatcataaaattaaGCATGCATGTTATATATGCCTAAAGACATACTCAAATAAGAGAggtctcaaaatccacatcgatgccatgcacaatggtgttacgtacgcatgtgatatttgcgaaaagacattctcaCAAAAAGCTAATCTCAAAgcccacatcgattcggtgcataatagtgtcagacatgcatgtgatgtttgcggaaagaaattcttcGCAAATAGTgttctcaaaaaacacattgatTCAGTACACAATAGAGTCACATATGCATGTGATTTATGCGGAAAACAGTTCTCAGAGAATGGTAATCTTAAAAGACACATAGATACTGCACACAATGGCGTtagacatgcatgtgatatttgcggcgAATCATTTACTCAAAAAGTTAGTCTCAAAAAGCACGTCGATGGAAAACATAATGGTGTCAAACATGAATGTGATGTTTGCGGCGAATCATTTACTCAAAAAGTTAGTCTCAAAAAACACGTCGATGGAAAACATAATGGTGTCAAACATGAATGTGATGTTTGCAGAAAGTCATTTTCACTTAAAACTATACTTAAAACCCACATCAATTCGGTGCACAATAGGGTCACATGTGTATGTGATGTATGCGGAAAgatatttacaagaaaaaatcatctcaaaacccacatcgagTCGGTGCATCATAAAATCACgcatgcatgtgataaatgtcaAAAGAGATACTCAGACAAGGGTAGTCTCAAAAAACACGTCGATTCAGTTCACTATAAAATTGTACATGCATGTAATGTTTGCGGAAATACATTCTCAAGAAAATAtaatctcaaaaatcacattaacATAGTGCATAGTGGTCTCAAGCATACTTGTGATATATGTCAAAAGAGATACTCAGACAAGGGTAGTCTCAAAaaccacatcgattcggttcacagtaaaattttacatgcaTGTAATATGTGTGGaaagaaatataaaacgaAGTCTCGTCTTAGGATTCACATTAAATCGACGCATTAA
- Protein Sequence
- MESSDNCPIRVKKEPSDVPLFENDSEMIDEKPDIKNFQLLPHLQENSTHFIRKFDENHDGEFGDKVEIIVECEDVKPNINLLQVEKIDDDSKIKGSDYEIRKAIKFEIVGKVKQEVIDDDADESTWNFDSKQKKKRRNTKKMNKDHNLKSHIGKVHNDTTYACEICVKKFSNIRSLKRHVNEMHNGFKHKCDGKKCNLKIDTKRKGMTHACDMCGKTFANRSNLLKHIKPIHNGIAYACDICKKAFSSKNYLKTHINSIHNGVFHTCDFCGKSFAQKVRLKYHIDTVHDGVKHTCDVCGKTFSNKSTLKIHIDSVHHKIKHACYICLKTYSNKRGLKIHIDAMHNGVTYACDICEKTFSQKANLKAHIDSVHNSVRHACDVCGKKFFANSVLKKHIDSVHNRVTYACDLCGKQFSENGNLKRHIDTAHNGVRHACDICGESFTQKVSLKKHVDGKHNGVKHECDVCGESFTQKVSLKKHVDGKHNGVKHECDVCRKSFSLKTILKTHINSVHNRVTCVCDVCGKIFTRKNHLKTHIESVHHKITHACDKCQKRYSDKGSLKKHVDSVHYKIVHACNVCGNTFSRKYNLKNHINIVHSGLKHTCDICQKRYSDKGSLKNHIDSVHSKILHACNMCGKKYKTKSRLRIHIKSTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484894;
- 90% Identity
- iTF_01484894;
- 80% Identity
- iTF_01484894;