Tpre003685.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:515158-517602[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00093 0.015 15.2 1.2 1 23 219 242 219 242 0.96 2 15 5.5e-06 8.9e-05 22.2 0.7 1 23 247 270 247 270 0.96 3 15 1.3e-05 0.00021 21.1 2.3 1 23 276 299 276 299 0.96 4 15 7.7e-06 0.00013 21.8 0.6 1 23 304 327 304 327 0.96 5 15 0.00012 0.002 18.0 1.6 1 23 333 356 333 356 0.95 6 15 7.1e-06 0.00012 21.9 0.2 1 23 361 384 361 384 0.92 7 15 0.00021 0.0035 17.2 0.3 1 23 390 413 390 413 0.96 8 15 1.8e-06 2.9e-05 23.8 2.2 1 23 418 441 418 441 0.95 9 15 2.6e-05 0.00043 20.1 0.2 1 23 446 469 446 469 0.95 10 15 1.5e-06 2.5e-05 24.0 0.7 3 23 477 498 476 498 0.96 11 15 4.8e-08 7.8e-07 28.7 0.3 1 23 503 526 503 526 0.97 12 15 0.00017 0.0027 17.6 0.2 1 23 532 555 532 555 0.95 13 15 4.5e-07 7.3e-06 25.7 0.6 1 23 560 583 560 583 0.96 14 15 2.3e-06 3.8e-05 23.4 0.6 1 23 589 612 589 612 0.95 15 15 0.00036 0.0058 16.5 1.1 3 23 619 640 617 640 0.90
Sequence Information
- Coding Sequence
- ATGAAGTCTACGAATATAATCAACTATACCGTTAAAGTAAAAGAAGAGCCTGATGATATGTGTTACAATGAAATTGATGGTGGCCAAACGGAAAACAAATTATCCGATACTGAAAATTTGCAAACACTCCGATGTCTGCAAGAAAATACCACTCACACCCTTAAAGAAGCCAGAGCGATTCTTGAATCTGAACCTAACCAAGAAATTAAGATACCCAATGTGGATTTATTAGCAACTGATAATGTGAACGAAGAAATTCCTGAATTTCCATGcaaccaaaaaattaaaatagaatcGGAGAGCGAAGATGTGAAACCTGATGTGGATTTATTAGTAACTGGTAAAGTGAACGAAGGAGTTTCAGAATTTCAACATaaccaagaaattaaaatagaattcGAGTGCGAAGATGTGAAACTCGATGCGGATTTATTAGTAAATAATAAAGCGAACGATTGGTCTGGTCGATATAAAGATATGAAAATTCACCATAATTGTGTAAACTTTTTCTCGAATCAAATGGAAAATAAGAAGATAGTAAAGAAAGAGTTTTTTggtgatattaaaaaaactgatGATATAAATACTAGCTGTAAACTTAAGGACGGACAGAATACGAAAATTGATCTTGTAGTAAAGAAAAGcaagcaattttttcaatgcgggacgtgttcaaaaaattttgtttcaaaacaTGTTCTAAAGATCCACATTGATTCGGTGCACAATCATATTACTTACCGATGTGACATTTGtgaaaagtcatttaaaagcaaaaattatcTAATGATCCACATTGATTCATTGCATAATGGTCGAAAATCTCACAGGTGCGATACGTGCGGAAAGTCATTTGCATTCAAGACTACTCTGAAAAAACACATTGATATGGTGCATAAACGTGTCACTTACCCATGCGACATTTGtaaaaagacattcacacaaaaaagttATCTTGGAGTCCATATCGACTCATTCCATAATGGTCGAAAACCTCATAGCTGCGATACgtgcggaaagtcattttcacaaaagggttttatgaaattacacattgattcggtgcataattcTATTTCTTACCCGTGTGAAATTTGTGGAAAATCATTTAAAGGGAAAGCTTATCTCAAAGTCCATATTGATTTTGAGCATAATGGTCGAAAATATCACAACTGCGACATTTGCGGAAAGTCGTTTGCACTTAAGCAAGTTTTGAGAGTTCACATTGATACGGTACATAATCATATCAATCACCCATGCCACACGTGTGGTAAgacattttctcaaaagaGTGGTCTGCAAATCCACATTGATTCGATGCATAATTCTATTTCTTACCCGTGTGACATTTGTGGAAAGTCATTTAAAAAGAAGGCTTATCTTAAGCCGCATATTGAATCATTGCATAATGGTTCAGGATCGCGCAATTGCaatatatgcggaaagacatttcCATATAAGCATAATCTAGAAGTTCACATCAACTCGGTGCACAATAGAATTACGTAcccatgtgatatttgtggaaagtcattttcGCAAACAAGTGCTCTCAAGCGCCACATTCAATCAATGCATAATGGTCAAAAACGTTACAACTGCGATATATGCAGAAAGATATTTGCACATAAGGTTGATCTAGAAATCCATATTGTTTCGGTGCATAATCGTATTACTTACTCGTGTGACATTTGTGGAAAGACGTTTTCAAAAAAGGATTACCTCAAGGTTCATATTGATTCATTGCATAATATTGGGAATCGTCACAGCTGCCAGATATGCGGAAAGTCCTTTATTCAAAAGATTAATCTCAGAGTTcatatcgattcggtgcataaaaatatcaatcatcTATGTTACAtgtgtggaaagacattttctATAAAGGGTAATCTCAAAGCCCATACAGATTTAATGCATAGTTATCGAAAACCTCATCAACCGCGATATATGCATAAGTATCATATGCACACTTAa
- Protein Sequence
- MKSTNIINYTVKVKEEPDDMCYNEIDGGQTENKLSDTENLQTLRCLQENTTHTLKEARAILESEPNQEIKIPNVDLLATDNVNEEIPEFPCNQKIKIESESEDVKPDVDLLVTGKVNEGVSEFQHNQEIKIEFECEDVKLDADLLVNNKANDWSGRYKDMKIHHNCVNFFSNQMENKKIVKKEFFGDIKKTDDINTSCKLKDGQNTKIDLVVKKSKQFFQCGTCSKNFVSKHVLKIHIDSVHNHITYRCDICEKSFKSKNYLMIHIDSLHNGRKSHRCDTCGKSFAFKTTLKKHIDMVHKRVTYPCDICKKTFTQKSYLGVHIDSFHNGRKPHSCDTCGKSFSQKGFMKLHIDSVHNSISYPCEICGKSFKGKAYLKVHIDFEHNGRKYHNCDICGKSFALKQVLRVHIDTVHNHINHPCHTCGKTFSQKSGLQIHIDSMHNSISYPCDICGKSFKKKAYLKPHIESLHNGSGSRNCNICGKTFPYKHNLEVHINSVHNRITYPCDICGKSFSQTSALKRHIQSMHNGQKRYNCDICRKIFAHKVDLEIHIVSVHNRITYSCDICGKTFSKKDYLKVHIDSLHNIGNRHSCQICGKSFIQKINLRVHIDSVHKNINHLCYMCGKTFSIKGNLKAHTDLMHSYRKPHQPRYMHKYHMHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -