Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:2903217-2908811[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 7.5e-05 0.0012 18.7 2.1 1 23 212 234 212 234 0.99

2 18 0.011 0.18 11.9 1.0 1 23 240 263 240 263 0.93

3 18 9.3e-06 0.00015 21.5 1.8 1 23 269 292 269 292 0.98

4 18 2.2e-06 3.6e-05 23.5 2.4 1 23 298 321 298 321 0.96

5 18 0.00014 0.0024 17.8 3.9 1 23 327 349 327 349 0.96

6 18 4.1e-05 0.00067 19.5 1.3 3 23 366 387 364 387 0.95

7 18 1.6e-05 0.00027 20.7 1.4 1 23 393 416 393 416 0.94

8 18 5.5e-05 0.0009 19.1 0.8 1 23 422 445 422 445 0.97

9 18 8.2e-05 0.0013 18.5 4.4 1 23 451 474 451 474 0.97

10 18 1e-05 0.00016 21.4 1.5 1 23 480 503 480 503 0.97

11 18 0.0055 0.09 12.8 0.9 2 23 510 532 509 532 0.93

12 18 1.6e-05 0.00026 20.8 2.3 1 23 538 561 538 561 0.97

13 18 3e-05 0.00048 19.9 5.5 1 23 567 590 567 591 0.96

14 18 7e-06 0.00011 21.9 2.7 1 23 596 619 596 619 0.97

15 18 2.2e-06 3.5e-05 23.5 0.8 1 23 625 648 625 648 0.96

16 18 8.5e-06 0.00014 21.6 0.6 1 23 654 677 654 677 0.98

17 18 4e-06 6.5e-05 22.7 5.4 1 23 683 706 683 707 0.97

18 18 7.3e-06 0.00012 21.8 1.6 1 23 712 735 712 735 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	7.5e-05	0.0012	18.7	2.1	1	23	212	234	212	234	0.99
2	18	0.011	0.18	11.9	1.0	1	23	240	263	240	263	0.93
3	18	9.3e-06	0.00015	21.5	1.8	1	23	269	292	269	292	0.98
4	18	2.2e-06	3.6e-05	23.5	2.4	1	23	298	321	298	321	0.96
5	18	0.00014	0.0024	17.8	3.9	1	23	327	349	327	349	0.96
6	18	4.1e-05	0.00067	19.5	1.3	3	23	366	387	364	387	0.95
7	18	1.6e-05	0.00027	20.7	1.4	1	23	393	416	393	416	0.94
8	18	5.5e-05	0.0009	19.1	0.8	1	23	422	445	422	445	0.97
9	18	8.2e-05	0.0013	18.5	4.4	1	23	451	474	451	474	0.97
10	18	1e-05	0.00016	21.4	1.5	1	23	480	503	480	503	0.97
11	18	0.0055	0.09	12.8	0.9	2	23	510	532	509	532	0.93
12	18	1.6e-05	0.00026	20.8	2.3	1	23	538	561	538	561	0.97
13	18	3e-05	0.00048	19.9	5.5	1	23	567	590	567	591	0.96
14	18	7e-06	0.00011	21.9	2.7	1	23	596	619	596	619	0.97
15	18	2.2e-06	3.5e-05	23.5	0.8	1	23	625	648	625	648	0.96
16	18	8.5e-06	0.00014	21.6	0.6	1	23	654	677	654	677	0.98
17	18	4e-06	6.5e-05	22.7	5.4	1	23	683	706	683	707	0.97
18	18	7.3e-06	0.00012	21.8	1.6	1	23	712	735	712	735	0.97

Sequence Information

Coding Sequence: ATGGAAATTCAAGATAACATAGTttgGATTAAGGAAGAACCGAACGATACCTGGGCAGATGCAGGCGTCGATTATAATTTCGATTCGGCGGGCTCTTCCAAAATCGAAAACTGTGAAACATTTCCGTATGATAAATCACCGgcACATCACACTAATGAGGCGAGTgagtcaaatgaaaaattaaatgaaaaaatatttaatgattttaagaGCAATGATGTTAAACTTGAACTACCGTCTGTATCGACAACTAACTTCATGTGCGAGGGTCAACATTTTGAAGCTATGGTAGAAGAAGAATATCAAACCAATgacaaaaaggaaaatatattcattgattttgaggCCCACTGTGTGAAACCTGAACTGCAGTATTTGGCAACAAATATCTGTGAAACGGAATATCAAAGTTATCCACCAATTGAAAAACTAGAAAACCAAATTCAAATCAATTGCTTGAACAATAAAGATCCATTAATTTTAACGAATAAAGAAttcgattttgaaaatgatggTGACCTTTCAGAAAGTTCTCGTTTGGAAATTGACGCGTccaaaaaagtaaacattttgAATACAGGAGAAGAAAGCCTGAAAACACGTATCAATACAGTACATAAGGGCATTCTATTATATGAATGTGTGATTTGTCACAATTCatatcgacaaaaaaaagctctgaaAATTCACATTAAGACACACAATAGTATCAAATCCttcgaatgtaatatttgtcacaaattaatTGGAAACCGAAGTCAACTCAAAACGCATACTATAGAAAtgcataataatttcaaaccctttgaatgtgatatttgtcacaaatcatttggagagaaaaataaacttacaaGGCACATGGAGACGGTACATGAAggaagcaaaccctttgaatgtgatatttgccataaatcatttggacaaagtAGTCACCTTAAATCTCATATAAGCGTAGTACATAATGGTgacaaaccttttgaatgtgaaatttgtcacaaatcatttgggtaCAAGAgtaaactcaaaaatcacaaGTCATTACATGAACTCAAGTTCGTTCGTTCATTACATGAACGCCATCAATCTTTCGGATGtaacatttgtcaaaaatcatttggaaaacaGAGTCAACTCAAAAAACACACTAAagaaatacatgaaaatttcaaaccatttgaatgtgatatttgtaaaaaatcatttggaaaacaGAGTCAACTCAAAAAACACTCTAAagaaatacatgaaaatttcaaaccatttgaatgtgatatttgtaaaaaatcatttggagagaAGACTAAACTTTCAAGGCACATAACGACGGTACATGATGGTAGtcaacccttcgaatgtgataaatgtaagaaatcatttggacaaagtTGTCACCTTAAATCTCATATAAACGTAGTGCATAATGGCaacaaaccttttgaatgtgaaatttgtcacacaTCATTTGGACAACAAAGTAAACTCAAAagtcacataaattcagtacataatagTATCAAATCGTTGGAATGtaacatttgtcacaaattaatTGGAAACCAAAGTCAACTTAAAAAACACACTATGGAAATACATAATCAattcaaaccctttgaatgtgatatttgtcacaaatcatttggagagaaaaataaacttacgAGGCACATGACGAcggtacatgatcgtagccaacccttcgaatgtgaattctgtcacaaatcatttggtcaGAATAGTCACCTAAAATCTCACATAAACGTAGTACACCATGGAAGCAAACcgtttgaatgtaaaatttgtcacaaatcatttgggtaCCAGAGTAAACTCAGAagtcacataaattcagtacacgAACGCCGTCAATCATTCGAATGtaacatttgtcaaaaatcatttggaaaccAGAGTCAACTCAAAAGTCACATTttttcagtacataatcgcagcaaaccctttgaatgtgatatttgccaaaaatcatttggagagaaaaataaacttacaaGGCACATggagacagtacatgaaggaaGCAAACCTtttaaatgtgatatttgtcataaatcatttggtcAGAATAGTcacctcaaatctcacataaacGTAGTACACCACGGAAGCAAACcgtttgaatgtgaaatttgtcacaaatcatttggataccagagtAAACTTAAAATTCACATAACGACGGTACATAACTTTAGCAATCTCCTTGAGAgttag
Protein Sequence: MEIQDNIVWIKEEPNDTWADAGVDYNFDSAGSSKIENCETFPYDKSPAHHTNEASESNEKLNEKIFNDFKSNDVKLELPSVSTTNFMCEGQHFEAMVEEEYQTNDKKENIFIDFEAHCVKPELQYLATNICETEYQSYPPIEKLENQIQINCLNNKDPLILTNKEFDFENDGDLSESSRLEIDASKKVNILNTGEESLKTRINTVHKGILLYECVICHNSYRQKKALKIHIKTHNSIKSFECNICHKLIGNRSQLKTHTIEMHNNFKPFECDICHKSFGEKNKLTRHMETVHEGSKPFECDICHKSFGQSSHLKSHISVVHNGDKPFECEICHKSFGYKSKLKNHKSLHELKFVRSLHERHQSFGCNICQKSFGKQSQLKKHTKEIHENFKPFECDICKKSFGKQSQLKKHSKEIHENFKPFECDICKKSFGEKTKLSRHITTVHDGSQPFECDKCKKSFGQSCHLKSHINVVHNGNKPFECEICHTSFGQQSKLKSHINSVHNSIKSLECNICHKLIGNQSQLKKHTMEIHNQFKPFECDICHKSFGEKNKLTRHMTTVHDRSQPFECEFCHKSFGQNSHLKSHINVVHHGSKPFECKICHKSFGYQSKLRSHINSVHERRQSFECNICQKSFGNQSQLKSHIFSVHNRSKPFECDICQKSFGEKNKLTRHMETVHEGSKPFKCDICHKSFGQNSHLKSHINVVHHGSKPFECEICHKSFGYQSKLKIHITTVHNFSNLLES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01482800;
90% Identity: iTF_01485837;
80% Identity: iTF_01485837;