Tpre008301.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1076031-1078857[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00055 0.009 15.9 2.1 1 23 18 41 18 41 0.90 2 16 1.8e-06 2.9e-05 23.8 0.5 1 23 47 70 47 70 0.96 3 16 1.4e-05 0.00022 21.0 0.4 1 23 76 99 76 99 0.97 4 16 0.00017 0.0028 17.5 1.2 1 23 105 128 105 128 0.94 5 16 3.8e-06 6.3e-05 22.7 1.0 1 23 134 157 134 157 0.96 6 16 7.9e-06 0.00013 21.7 0.3 2 23 164 186 163 186 0.96 7 16 6.3e-07 1e-05 25.2 1.7 1 23 192 215 192 215 0.93 8 16 6.1e-05 0.001 18.9 1.4 1 23 221 244 221 244 0.96 9 16 7.9e-06 0.00013 21.7 0.3 2 23 251 273 250 273 0.96 10 16 1.2e-06 1.9e-05 24.3 0.7 1 23 279 302 279 302 0.93 11 16 1.4e-06 2.3e-05 24.1 1.7 1 23 308 331 308 331 0.96 12 16 4.6e-05 0.00076 19.3 3.7 1 23 337 360 337 360 0.97 13 16 6.1e-05 0.001 18.9 2.0 1 23 366 389 366 389 0.96 14 16 1.8e-06 3e-05 23.7 0.9 1 23 395 418 395 418 0.95 15 16 1.2e-05 0.00019 21.2 2.6 1 23 424 447 424 447 0.97 16 16 3.1e-05 0.00051 19.9 0.6 1 23 453 476 453 476 0.96
Sequence Information
- Coding Sequence
- ATGTCAGATTTAGAAGAACTTAAgcttaaaaatcaaaatagcAAAATACGTCACAAATGCGATCATTGCGGTAAGATTTTCTTAACTAAACAAAACTTGAACAATCACGTGGATGGAGTTCATTTGTATCtaagaaaatttgtttgcGACGATTGTGGACAGTCTTTTGTCACAAAACAACATTTGAGTGTTCATATGATAAATGTccatcaaaaaatgaaaaattacaactgCGATTCGTGTGGAAAGTCTTTTGTCTACAAGATAAGCTTGGTCAGGCACATTACCAcggttcatgaaaaaatcaaagatcacAAATGCTTCGAGTGTGGCAATTCTTTTGGACAAAAGAGTTATCTAATGAATCATATAGATCTAGTTCATTTGAAGCTCAAAGCACACATGTGTGAGGAATGTGGAAAGTCTTTTGGTCAAAAGCAGACTTTAATGAAGCACATTGATacagttcatttgaaaataaaagaccAAAAATGCGGAGAGTGTGGAAAGTCTTTTGGTTATAAAAATGATCTGATGAAGCACATTGATACAGTTCATCTGGAACTCAAACAACACACGTGTGAGGAATGTGGAAAGTCTTTTGGTCGCAAAAGTAACTTACATAAACACATTGCTgcagtacataaaaaaatcaaagagcaCAATTGCGGAGAGTGCGATAAGtcttttggaaaaaaacagaCTTTAATGAAGCACATTGATacagttcatttgaaaataaaagatcaaAAATGCGGAGAGTGTGGAAAGTCTTTTGGTTATAAAAATGATCTGATGAAGCACATTGATACAGTTCATCTGGAACTCAAAGAACACATGTGTGAGGAATGTGAAAAGTCTTTCGGTCAAAAAAGTAACTTAAATAAACACATGGCTgcagtacataaaaaaatcaaaaatcacaAATGCAAAGAGTGTGACAAGtcgtttggacaaaaaattaatctaacGAAGCATATAGATATGGTTCATTTGAAACTCAGAAATCATAAATGCGATGAGTGTGGCAAGTCTTTTGGTGGAAAAacacacttgcacacacacatagctacagttcataaaaatatcaaagatcACAAATGCTTTGAGTGTAGCAAATCTTATGGACAAAAGAGTAATCTAATGACGCATATAGATTCAGTTCatttaaaactcaaaaatcatgaATGCGAGGAGTGCGACAAGTCTTTTGGAAAGAAAAGTGATCTAATGAAGCATATAAATCtagttcatttgaaactcaaaaatcataaatgcGATGAGTGCAGCAAGTCTTTTGGTACGAAATTCAAGCTGACGAGACACATAAATgttattcatttaaaactcAAAGAATacaattgcaaaaaatgtgGCAAgttatttggacaaaaaataaatctgatGAAGCACATAGATTCAATTcattcgaaaataaaagaacacgTTAGCTTATAA
- Protein Sequence
- MSDLEELKLKNQNSKIRHKCDHCGKIFLTKQNLNNHVDGVHLYLRKFVCDDCGQSFVTKQHLSVHMINVHQKMKNYNCDSCGKSFVYKISLVRHITTVHEKIKDHKCFECGNSFGQKSYLMNHIDLVHLKLKAHMCEECGKSFGQKQTLMKHIDTVHLKIKDQKCGECGKSFGYKNDLMKHIDTVHLELKQHTCEECGKSFGRKSNLHKHIAAVHKKIKEHNCGECDKSFGKKQTLMKHIDTVHLKIKDQKCGECGKSFGYKNDLMKHIDTVHLELKEHMCEECEKSFGQKSNLNKHMAAVHKKIKNHKCKECDKSFGQKINLTKHIDMVHLKLRNHKCDECGKSFGGKTHLHTHIATVHKNIKDHKCFECSKSYGQKSNLMTHIDSVHLKLKNHECEECDKSFGKKSDLMKHINLVHLKLKNHKCDECSKSFGTKFKLTRHINVIHLKLKEYNCKKCGKLFGQKINLMKHIDSIHSKIKEHVSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485050;
- 90% Identity
- -
- 80% Identity
- -