Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:1145874-1147465[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.007 0.11 12.4 0.7 1 23 18 41 18 41 0.90

2 17 0.00028 0.0046 16.8 0.2 1 23 47 70 47 70 0.95

3 17 9.9e-05 0.0016 18.3 0.3 1 23 76 99 76 99 0.97

4 17 1.2e-05 0.00019 21.2 0.6 1 23 105 128 105 128 0.96

5 17 0.0001 0.0017 18.2 0.2 1 23 134 157 134 157 0.91

6 17 4.4e-05 0.00072 19.4 0.3 1 23 163 186 163 186 0.96

7 17 0.0001 0.0017 18.2 0.3 1 23 192 215 192 215 0.91

8 17 3.2e-05 0.00053 19.8 0.8 1 23 221 244 221 244 0.92

9 17 1.3e-05 0.00021 21.1 0.5 1 23 250 273 250 273 0.96

10 17 3.7e-05 0.0006 19.6 5.4 1 23 279 302 279 302 0.96

11 17 7.3e-06 0.00012 21.8 4.4 1 23 308 331 308 331 0.97

12 17 1.5e-06 2.5e-05 24.0 0.5 1 23 337 360 337 360 0.96

13 17 0.00017 0.0027 17.5 0.5 3 23 369 390 368 390 0.92

14 17 7e-07 1.1e-05 25.0 1.4 1 23 396 419 396 419 0.97

15 17 9.4e-07 1.5e-05 24.6 0.6 1 23 425 448 425 448 0.96

16 17 2.4e-07 3.9e-06 26.5 1.5 1 23 454 477 454 477 0.97

17 17 3.3e-06 5.4e-05 22.9 1.0 1 23 483 506 483 506 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.007	0.11	12.4	0.7	1	23	18	41	18	41	0.90
2	17	0.00028	0.0046	16.8	0.2	1	23	47	70	47	70	0.95
3	17	9.9e-05	0.0016	18.3	0.3	1	23	76	99	76	99	0.97
4	17	1.2e-05	0.00019	21.2	0.6	1	23	105	128	105	128	0.96
5	17	0.0001	0.0017	18.2	0.2	1	23	134	157	134	157	0.91
6	17	4.4e-05	0.00072	19.4	0.3	1	23	163	186	163	186	0.96
7	17	0.0001	0.0017	18.2	0.3	1	23	192	215	192	215	0.91
8	17	3.2e-05	0.00053	19.8	0.8	1	23	221	244	221	244	0.92
9	17	1.3e-05	0.00021	21.1	0.5	1	23	250	273	250	273	0.96
10	17	3.7e-05	0.0006	19.6	5.4	1	23	279	302	279	302	0.96
11	17	7.3e-06	0.00012	21.8	4.4	1	23	308	331	308	331	0.97
12	17	1.5e-06	2.5e-05	24.0	0.5	1	23	337	360	337	360	0.96
13	17	0.00017	0.0027	17.5	0.5	3	23	369	390	368	390	0.92
14	17	7e-07	1.1e-05	25.0	1.4	1	23	396	419	396	419	0.97
15	17	9.4e-07	1.5e-05	24.6	0.6	1	23	425	448	425	448	0.96
16	17	2.4e-07	3.9e-06	26.5	1.5	1	23	454	477	454	477	0.97
17	17	3.3e-06	5.4e-05	22.9	1.0	1	23	483	506	483	506	0.96

Sequence Information

Coding Sequence: atGTCGGCTTTGGAAAAACATAAgcttaaaaatcaaaatgctAAAATACGTCACAAATGCGATTATTGCGGTAAGATTCTCCTAACTAAACGAAATTTGAACAATCACGTGGATGGAGTTCATTTGAAACTAAAGAAATTTGTTTGCGACGATTGTGGACAGTCTTTTGTCATGAAAAAACGTTTGAATGATCACGTTATGAATGTCCATcaaagaatcaaaaattactcgtgcgacacgtgtaaaaaagtttttggtTATGAAAGGAGTTTGGCTAAGCATATTGcaacagttcatgaaaaaatcaaagatcatAAATGCGAAGATTGTAACAAGGTTTTTGGAATAAAGTATAATCTTATGCGACACATCGATGTGGTTCATCTATTAATCAAAGAACATATATGCAAAGAATGTGGAAAGGCTTTTGGTCTTAAACAGGACTTGAATCGACACATTGACGCagcacataaaaaaatcaaagaacaCAAATGCGGAGAGTGTGACAAGGTTTTTGGAATAAAGAATAATCTTATGCGACACATCGATGTGGTTCATCTATTAATCAAAGAACATATATGCAAAGAATGTGGAAAGGCTTTTGGTCTTAAACAGGACTTGAATCGACACATTGACgcagtacataaaaaaatcaaagatcacAAATGCGAAGAGTGCGGCAAGTCTTTTGGAAAAAAGCAGACTTTAATGCAGCACATAGATGCAGTTCATCTGGAACTCAAAGAACATATGTGTGAAGAGTGCGGCAGGTCGTTTGGATTTAGAGAGAGTCTGATGAGGCACATAAATGTAGTTCATTTGGAACTTAGAGAACATAAGTGCGGAAAATGTGAAAAGTCTTTTTGTTATAAAAGAGACTTAAATAGACATATGAGTATAGtccatgaaaaaatcaaaggtCACAAATGCGAAGAGTGTGGAAAGTCATTCAGTTATAAATGTGAATTGAATAAACACACTGCcacagttcatgaaaaaataaaagatcatAAATGCGGAGAGTGTGACAAGGCTTTTGGACGAAAGAGTAGTCTTATGCGTCACATCGATGTGGTTCATCTATTAATCAATGAACATAATATATGCAAAGAATGTGGAAAGTCTTATGGGTTTAAACATGCCTTGAATCGACACATTGACgcagtacataaaaaaatcaaagatcatGAATGTAAAGAGTGTGGAAAGTTTTTTAGTGATAAAGGTTATCTGATGAAGCACATTGATACAGTTCATCTGGAACTCAAAGAACACATGTGTGAGGAATGTGGCAAATCTTTTGGAGTAAAAAGTAATCTGATGAAGCACATTGATACAGTTCATCTGGAACTAAAAGAACACAAATGTGAAGAATGCGGCAAGtcgtttggacaaaaaaataatctaacaAAGCATATAGATACAGTTCATCTGGAACTCAAAAAACACATGTGTAAGGAATGTGGAAAGGTTTTTGGTTATAAACGTGATCTGATAAAACACATTAGTACAGCGCATCTGGAACTTTAA
Protein Sequence: MSALEKHKLKNQNAKIRHKCDYCGKILLTKRNLNNHVDGVHLKLKKFVCDDCGQSFVMKKRLNDHVMNVHQRIKNYSCDTCKKVFGYERSLAKHIATVHEKIKDHKCEDCNKVFGIKYNLMRHIDVVHLLIKEHICKECGKAFGLKQDLNRHIDAAHKKIKEHKCGECDKVFGIKNNLMRHIDVVHLLIKEHICKECGKAFGLKQDLNRHIDAVHKKIKDHKCEECGKSFGKKQTLMQHIDAVHLELKEHMCEECGRSFGFRESLMRHINVVHLELREHKCGKCEKSFCYKRDLNRHMSIVHEKIKGHKCEECGKSFSYKCELNKHTATVHEKIKDHKCGECDKAFGRKSSLMRHIDVVHLLINEHNICKECGKSYGFKHALNRHIDAVHKKIKDHECKECGKFFSDKGYLMKHIDTVHLELKEHMCEECGKSFGVKSNLMKHIDTVHLELKEHKCEECGKSFGQKNNLTKHIDTVHLELKKHMCKECGKVFGYKRDLIKHISTAHLEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -