Tpre005295.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1451186-1453533[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 9 1.5e+02 2.7 0.1 6 23 10 31 8 31 0.84 2 22 0.00018 0.0029 17.5 2.8 1 23 37 60 37 60 0.97 3 22 0.00015 0.0024 17.7 0.8 1 23 66 89 66 89 0.95 4 22 7.3e-05 0.0012 18.7 2.1 2 23 96 118 95 118 0.95 5 22 0.00034 0.0056 16.6 0.9 1 23 124 147 124 147 0.96 6 22 6.9e-06 0.00011 21.9 0.5 1 23 182 205 182 205 0.98 7 22 1.6e-05 0.00026 20.8 2.6 1 23 211 234 211 234 0.98 8 22 1.2e-05 0.00019 21.2 1.0 1 23 240 263 240 263 0.98 9 22 0.00076 0.012 15.5 3.6 1 23 269 292 269 292 0.96 10 22 0.0043 0.071 13.1 3.1 1 23 298 321 298 321 0.97 11 22 0.00011 0.0017 18.2 0.2 1 23 327 350 327 350 0.95 12 22 0.0002 0.0032 17.3 0.3 1 23 356 379 356 379 0.97 13 22 5.4e-05 0.00088 19.1 0.5 1 23 385 408 385 408 0.97 14 22 6.9e-05 0.0011 18.8 0.5 1 23 414 437 414 437 0.97 15 22 2.3e-05 0.00038 20.2 0.4 1 23 443 466 443 466 0.96 16 22 9.5e-05 0.0015 18.3 0.3 1 23 472 495 472 495 0.97 17 22 6.4e-05 0.001 18.9 1.1 1 23 501 524 501 524 0.98 18 22 0.00011 0.0017 18.2 1.2 1 23 528 551 528 551 0.96 19 22 9.1e-05 0.0015 18.4 1.0 1 23 557 580 557 580 0.98 20 22 0.00055 0.0089 15.9 0.6 1 23 586 609 586 609 0.97 21 22 0.0087 0.14 12.2 1.6 1 23 615 638 615 638 0.97 22 22 5.3e-06 8.6e-05 22.3 0.6 1 23 644 667 644 667 0.97
Sequence Information
- Coding Sequence
- atggataaagatGACAAACAAAACATTTGTGATATTGACCGGAAGACATTTACACTGGAATCAAGCATGATTACGCatcgagacacaattcatgatgaacaaaaagattacacatgtgacaagtgcgaagagaaatttgaattccgAAGTCAtctgagtagacaccaaatatcagaacacaaaggccgcaaagattttgcatgcgacatgtgcgagagaaaatttgtgaaaaaatcgagtttgcttacgcaccaaaaattagtacacaaagatcgcaaaaatttgacatgcaacaagtgcgagaagaaatttgaaaataaatcagctttactaaaacataaaaaaatattccacgaagttttcaaagattacttatgtgaaaagtgtgcgaagagatttggaaataaatcaagtttgctCTATCACCTGAAAACAGTACACggaggttgcaaagattttccattcgaaaattacgaaaagaaatttaatgaTAAACAGTATTTGTTTTCGAATCGAAGGATAGTATgcaaaaatcgcaaagattacgaatgcgatgattgcgagaaaaaatttggacggaGATGGGATTtactcagacaccaaaaatcaATACACGAAAGTTGGAAAGACTATACGtgcgataagtgtgaaaaggaattcggacaaaaatcgcatttgctctaccaccaaagaATGGTACACGAAAgtcataaaaatttccaatgtgatatttgcgagcgaaaatttggagaaaaatcgaaattgattcgACATCAAAAGACGGTTCACCAAGGTcataaagattttgcatgcgacaagtgcgagaagaaatatggGCACAAAACACATTTGATTaatcaccaaaaaatagtccacgaaggtcacaaagactACGTGTGCAACATGTGCGAGAAGGCCTTCGGACTTCGACATCATTTGCTCGTGCATCAcgaaacagtacacgaaggtcagaaatatttcgcatgcgacaagtgcgaaaaagtatttggacaaaaaccgaatttgctcacccacctaaaattagtccacgaaggtcgcaaagactacgcatgcaacatgtgtgagaagaaatttggacgaagaGCGGATATGCTTTCGCACCAAAGGGTAATACACAAAAAttgcaaagatttcgtatgcgataagtgcgaaaagaaatttggggatctAAGCACTTTGAtcagacacaaaaaaatagtccatgaaggtcgcaaagatttcgcgtgcgacaagtgcgagaagaaattcggacaaaaaccTCAATTGCtcgtacatcaaaaaacagtacacgaaggtctcaaagattatgcatgcgacaaatgcgagaagaaatttgggaatcCAAGCACTTTGAtcagacacaaaaaaatagttcatgaaggtcgcaaagactatgcatgcgacaattgcgagaagaaatttggacaaaaacctCAATTGCTCATACATCAAAAAAcggttcacgaaggtcgcaaagacttcacgtgtgacaagtgtgagaagaaatttggggaacgaggcactttgatcaaacaccaaaagacagtacattgCAAAGATCATGCATGCGACTTGTGTGAAacaaaatttggacaaaaatcagatttgcttcggcaccaaaatacagtgcacgatggtcgcaaagatttcgtttgcgacaagtgtgaacagaaatttggtgaaaaatcgaaattgattagACACACAAGAACAGTACATCAGGGTGTCAAAAATTACGCGTGCGACGAGTGTAAAACAAAATTCTGGGATCGAAGTGATTTGATTAAGCACCGCAAGacggtccacgaaggtcgcaaagattatgcatgcgacatgtgttgcaagaaatttggacgtaaacCCGATTTGtcgatacaccaaaagacagtacatgagggtcgtaaagattatgcatgtgacaaatgcaaaAAGGCATTTGGGGTTCAAAGCAATTTGctaaaacaccaaaaaacagtccacgaaggtcgaaaagatttcgcatgtgacaaaggCGAGAAGAACTGGTGA
- Protein Sequence
- MDKDDKQNICDIDRKTFTLESSMITHRDTIHDEQKDYTCDKCEEKFEFRSHLSRHQISEHKGRKDFACDMCERKFVKKSSLLTHQKLVHKDRKNLTCNKCEKKFENKSALLKHKKIFHEVFKDYLCEKCAKRFGNKSSLLYHLKTVHGGCKDFPFENYEKKFNDKQYLFSNRRIVCKNRKDYECDDCEKKFGRRWDLLRHQKSIHESWKDYTCDKCEKEFGQKSHLLYHQRMVHESHKNFQCDICERKFGEKSKLIRHQKTVHQGHKDFACDKCEKKYGHKTHLINHQKIVHEGHKDYVCNMCEKAFGLRHHLLVHHETVHEGQKYFACDKCEKVFGQKPNLLTHLKLVHEGRKDYACNMCEKKFGRRADMLSHQRVIHKNCKDFVCDKCEKKFGDLSTLIRHKKIVHEGRKDFACDKCEKKFGQKPQLLVHQKTVHEGLKDYACDKCEKKFGNPSTLIRHKKIVHEGRKDYACDNCEKKFGQKPQLLIHQKTVHEGRKDFTCDKCEKKFGERGTLIKHQKTVHCKDHACDLCETKFGQKSDLLRHQNTVHDGRKDFVCDKCEQKFGEKSKLIRHTRTVHQGVKNYACDECKTKFWDRSDLIKHRKTVHEGRKDYACDMCCKKFGRKPDLSIHQKTVHEGRKDYACDKCKKAFGVQSNLLKHQKTVHEGRKDFACDKGEKNW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -