Tpre009357.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:293183-297576[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 8e-06 0.00013 21.7 1.0 1 23 372 395 372 395 0.95 2 22 1.3e-06 2.2e-05 24.1 1.2 1 23 401 424 401 424 0.98 3 22 0.062 1 9.5 0.9 1 23 429 452 429 452 0.92 4 22 0.00073 0.012 15.5 2.8 1 23 457 480 457 480 0.95 5 22 3.7e-05 0.0006 19.6 0.7 1 23 485 508 485 508 0.96 6 22 0.00042 0.0068 16.3 0.8 1 23 515 538 515 538 0.97 7 22 0.0036 0.058 13.4 0.8 1 23 543 566 543 566 0.95 8 22 0.0027 0.044 13.8 2.5 1 23 571 594 571 594 0.94 9 22 6.8e-05 0.0011 18.8 0.4 1 23 599 622 599 622 0.94 10 22 0.00082 0.013 15.4 3.5 1 23 629 652 629 652 0.94 11 22 7.9e-05 0.0013 18.6 1.0 1 23 657 680 657 680 0.92 12 22 1.4e-05 0.00023 21.0 0.3 2 23 686 708 686 708 0.96 13 22 3.5e-05 0.00058 19.7 1.3 1 23 713 736 713 736 0.94 14 22 2.1e-06 3.4e-05 23.5 0.2 2 23 742 764 741 764 0.94 15 22 1.4e-05 0.00024 20.9 0.5 2 23 770 792 770 792 0.97 16 22 0.00079 0.013 15.4 0.7 1 23 797 820 797 820 0.92 17 22 0.0028 0.046 13.7 1.8 1 23 825 848 825 848 0.91 18 22 1.1e-05 0.00019 21.2 2.3 1 23 853 876 853 876 0.94 19 22 0.00043 0.0071 16.3 1.0 1 23 882 905 882 905 0.89 20 22 3.9e-05 0.00064 19.5 1.8 1 23 910 933 910 933 0.96 21 22 7.4e-06 0.00012 21.8 0.4 1 23 938 961 938 961 0.95 22 22 0.00021 0.0034 17.3 2.9 1 23 966 990 966 990 0.92
Sequence Information
- Coding Sequence
- ATGGAGCCCAGTGAAATATTCAACTCTTCCgtcaaGGAGAATAAGGAACCTTCTGAATTGTCTCCAACTGATCATAAAAACGTCCTACACTTGCGATTCCGAGATAATTTGGTCCTTCGGATTCCAAGATGCGACGATATGGCAATTGAATTCCAATGTAAAGACGTGAAGTCCGATAAGAACTTATTACTTCGAGGGAAAATggatttaaacaaaattaaaaaagagccTGCGAAGAATCTGAAAGAGGAAAACATCGACGACATGGCAGAAGAATCGAATTCGAATTTCGACGGTGAAGTCAATAACGAAATCGAAATCAAATTCGAATGTCACGACGAGAAGCCCAATAAGAACTTATTACTACGAcagaaaatgaatcaaaacaaaattaaagaagaacccccggaaaaaattaaagaagaagtTGTCGACGACATGGCCGAGGAATCGAATTCGAATTTTGACGGTGAAGTCAATAACGACATAGAAATTGAATTCGAATGTCAAGATGAGAAGCCCAATAAGAACTTATTACTACGAcagaaaatgaatcaaaacaaaattaaagaagaacccccggaaaaaattaaagaagaagtTGTCGACGACATGGCCGAGGaatcgaatttgaattttgacgGTGAAGTCAATAACGACATAGAAATTGAATTCGAATGTCAAGATGAGAAgcccaataataatttattactaCGAcagaaaatgaatcaaaacaaaattaaagaagaacccctggaaaaaattaaagaagaagtTGCCGACGATATGGCCGAGGaatcgaatttgaattttgacgGTGAAGTCCAAATAGTTTTCGAGTGTGAAGATGTCAAGCCCAGGGTGAATTTACCAGTAGCGCTGAGaccgaagaaagaaaattttattgacaGTGGAGAAGAGATGAATTTGAATTGTGAACTAgtcaaacaaaataaaaaaaaaagaattatgaaaaagtcTACCCTTCAAAAGAGACTTAAATCACAGAGGGGTACACTTCAAATCGGTAGCACCTCGGCGCATAAatcacgtgaaaaaaaatgtgctcaAAAGAGCAAACTCAAAATAGATgcattacacaaaaaaatcccttttgaatgtgatatatgtaaaaagagatttacacaaaaaagcACTGTCAAAAGGCACATTGAATTGATACATATGGGTAAGAAGAAATATAAATGTGGAAAGTGTGGGCAAAAATTCAGAACTAAGAATTCTCTCCAAATTCACATCAATacggtgcataataaaatcacttATGAATGTGATGTATGCAAAAAGACATTCCTTGTGAAGAGCCATATCCAAGGCCACATTGTTAGAATGCATAGTGGAATCAAATTCACATGCGTTACATGCGGAAAGGAATACTGCACGAAGGGTGAGCTAAAAAATCACACAGATTCGAAGCATAATGGTAAGAGACACGAATGCGGTAcatgcggaaagtcattttcacTTCAGAGAGGACTCCGAATTCACATACGTTTGCTGCACGATAAGCATACGCATACTTATGAATGCGATCGATGCCAAAAGAAATTTCCCAGCGAACGTTATCTCGAAACCCACATTATCTCGAAGCACAGTGGCATCAAATTCACATGCGATACATGCGGAAAGGAATGCTCCAGCAAGATATTGATAAAATCGCACATCAACGCCGTGCATAACAAAATCCTTCAcccatgtaatatatgcggaaaaaaattcatgcacaaaaccACCATCAGAATGCACATCGATTCGGTCCATAAGGGTATCAAGCATAAATGCGACACGTGCGGAAAGATATATACGAATACGCCTAATCTCCGCGCTCACATAGCTCAGgcgcataaaaataaaaagacctCCCATGCGTGTGGTacttgtggaaagacattcacgcATAGAGCCCGTCTCAAGCTCCACATCAGTTCGAGACACGAGGGTGTCAAGCATAAATGCGGTACATGCGGGAGTACATTCATAACCAAATCCAGTCTCCAGAAGCACATCGATGCTCTGCACAATGGTATCGGACCTAAGTGTAAATTATGCGGAAAGGTATTTTCACGGAACATCGCTCTGCaaacccacatcgattcggtgcacaatAAAATCACTCATAAGTGCGAAACTTGTGGAAAAGTATACTCTCGTGTAAATTCTCTCAAAAGACACATAGAAGAGTCGCATAATAATTTTGCCTTGCCTTGTGAAATATgcggaaaaatattcaaacgaaAGGAGAATCTCCAAGACCATATCGATTCGACGCATGACGGTACGGGGCCTAAATGtgaaatatgcggaaagaaatatCCATCAAAGAAGCAACTCAGAGACCATATCaattcggtgcataataaaatcacttATCCATGTGATATctgtaaaaagaaattgaaaagcaAAAGTTATCTCAAAATACATAACGATATGGTACATAAGCGCATTAAACATCCGTGTGAtttatgcgaaaagaaatacTCTAAGAAGGAAGAACTCAAACACCACGTCGAAGCGGAGCATTATGGCaccacacatgcatgtgacaaatgcaaTAAGACATTTAAACGAAAGGATAAACTCAGAGTCCACATTGAATCGATACACAATAATGGTAAAAAACACGAATGCCGCGAGTGCGGTAAGAAATTCACTACAAAGTCCGAACGCACAGTCCACGTCGATGCGGTGCatagaaaaataacttttgaatGCGATAcctgcaaaaagaaattttccacTAAAACTTATCTCCGAGATCACATCGATTCGgagcataataaaattactcacgcttgtgatatatgcggaaagtcatttcCACGAATTCCCAGTCTCAAGAGGCACATTGAGACGACGCATACTAACATCACTCATGCATGCACAATATGCAAAAGTACATTTAAACGAAAGGATGGGCTCAAAAGGCATATTAATACAAAGATGCATAAAGATGCCACGCTGTGcaaataa
- Protein Sequence
- MEPSEIFNSSVKENKEPSELSPTDHKNVLHLRFRDNLVLRIPRCDDMAIEFQCKDVKSDKNLLLRGKMDLNKIKKEPAKNLKEENIDDMAEESNSNFDGEVNNEIEIKFECHDEKPNKNLLLRQKMNQNKIKEEPPEKIKEEVVDDMAEESNSNFDGEVNNDIEIEFECQDEKPNKNLLLRQKMNQNKIKEEPPEKIKEEVVDDMAEESNLNFDGEVNNDIEIEFECQDEKPNNNLLLRQKMNQNKIKEEPLEKIKEEVADDMAEESNLNFDGEVQIVFECEDVKPRVNLPVALRPKKENFIDSGEEMNLNCELVKQNKKKRIMKKSTLQKRLKSQRGTLQIGSTSAHKSREKKCAQKSKLKIDALHKKIPFECDICKKRFTQKSTVKRHIELIHMGKKKYKCGKCGQKFRTKNSLQIHINTVHNKITYECDVCKKTFLVKSHIQGHIVRMHSGIKFTCVTCGKEYCTKGELKNHTDSKHNGKRHECGTCGKSFSLQRGLRIHIRLLHDKHTHTYECDRCQKKFPSERYLETHIISKHSGIKFTCDTCGKECSSKILIKSHINAVHNKILHPCNICGKKFMHKTTIRMHIDSVHKGIKHKCDTCGKIYTNTPNLRAHIAQAHKNKKTSHACGTCGKTFTHRARLKLHISSRHEGVKHKCGTCGSTFITKSSLQKHIDALHNGIGPKCKLCGKVFSRNIALQTHIDSVHNKITHKCETCGKVYSRVNSLKRHIEESHNNFALPCEICGKIFKRKENLQDHIDSTHDGTGPKCEICGKKYPSKKQLRDHINSVHNKITYPCDICKKKLKSKSYLKIHNDMVHKRIKHPCDLCEKKYSKKEELKHHVEAEHYGTTHACDKCNKTFKRKDKLRVHIESIHNNGKKHECRECGKKFTTKSERTVHVDAVHRKITFECDTCKKKFSTKTYLRDHIDSEHNKITHACDICGKSFPRIPSLKRHIETTHTNITHACTICKSTFKRKDGLKRHINTKMHKDATLCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -