Tpre009985.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:5443516-5448582[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.12 2 8.6 0.0 5 23 34 53 33 53 0.95 2 25 0.00031 0.0051 16.7 4.2 1 23 59 82 59 82 0.95 3 25 2.1e-05 0.00034 20.4 0.7 1 23 88 111 88 111 0.96 4 25 4.6e-05 0.00074 19.3 4.3 1 23 117 140 117 140 0.97 5 25 0.00038 0.0063 16.4 0.4 1 23 146 169 146 169 0.96 6 25 0.00072 0.012 15.6 2.5 1 23 175 198 175 198 0.97 7 25 0.55 9 6.5 1.1 8 23 219 235 218 235 0.94 8 25 2.6e-05 0.00042 20.1 1.1 1 23 241 264 241 264 0.97 9 25 0.0086 0.14 12.2 1.6 1 23 270 293 270 293 0.95 10 25 6.7e-05 0.0011 18.8 1.7 1 23 299 322 299 322 0.96 11 25 6.2e-06 0.0001 22.1 1.4 1 23 328 351 328 351 0.97 12 25 0.0016 0.027 14.4 1.2 1 23 357 380 357 380 0.95 13 25 5.4e-05 0.00088 19.1 2.9 1 23 386 409 386 409 0.97 14 25 0.7 11 6.2 0.5 1 23 415 438 415 438 0.94 15 25 1.2e-05 0.00019 21.2 0.7 1 23 444 467 444 467 0.96 16 25 5e-05 0.00082 19.2 0.9 1 23 473 496 473 496 0.97 17 25 6.5e-05 0.0011 18.8 1.8 1 23 502 525 502 525 0.98 18 25 1.6e-06 2.7e-05 23.9 2.7 1 23 531 554 531 554 0.97 19 25 7.8e-06 0.00013 21.7 1.1 1 23 560 583 560 583 0.97 20 25 0.004 0.065 13.2 2.7 1 23 589 612 589 612 0.97 21 25 0.00071 0.012 15.6 1.3 1 23 618 641 618 641 0.97 22 25 4.1e-05 0.00067 19.5 0.8 1 23 647 670 647 670 0.96 23 25 2.9e-06 4.7e-05 23.1 1.4 1 23 676 699 676 699 0.97 24 25 1.5e-05 0.00025 20.8 0.9 1 23 705 728 705 728 0.98 25 25 9.6 1.6e+02 2.6 0.1 8 21 741 754 734 755 0.85
Sequence Information
- Coding Sequence
- atgaataaaagtgagaagaaatccgatGAAGTTGcctcggaaaataatttaagtgaacacggcattgttgtttcagacgacaaaaaatacgttcgTGATATTTGCCAAGAGGTATTTACACTTGAATCAAATATGATAACACACCAGGACACAATTCACGATGAACGaccaaatttttcatgtaacaagtgcgagaagaaatttgagttccgaagtcatttgagtagacatcaaGTATCAGAACACATAGGGTGCAACGATTTtccatgtgacaagtgcgagaaaaaatttgtgaaaaaatcgagtttgcttgcgcatcaaaaattggtacacaaagatcgagaaaaatttaagtgcaataagtgtgagaaaaaatttgaaaataaatcaactttactcaagcacaaaaaaatattccacgaagttttcaaaaattacctATGTGAAgtgtgcgcgaagagatttgatacGAAAAATAGTTtactcttgcacataaagacagtccatgagtgTTGCCAaaatttcacatgtgacaagtgcaagGAGAAATTTAGGAATAAATCCGATCTTCTTTTTCACCTGAAGACTGTTCACgcaggtcgaaaagattttgcctGCAAAGTAAACAAAGATTACTCATTTGACAATTgggagagaaaatttgaaaaaaaatctcatttgctCATTCACCTGAAGACAGTCCACGGAGatcaaaaagatttcgcatgcgacaagtgtgaaaagaaatatacacaaaaagtgagtttgctctcccaccaaaGGACTGTCCATGAGGGTCAGAAAGATCatgcgtgcgacaagtgcgaaaaaaaatttggactaaaaaataacttgtttatacacaaaattacagtacacgaaggccgcaaagatcatgcatgcgacaaatgtcagaaaaaatttggggttttaagcaatttaataaaacatcaaaagacagtccacgagggtcgcaaagattacgcatgtaatAGGTGCGAGAAGAGATTTGGaagtaaatcaaatttaatcaagcACCAAAAAAGAATACACAacgatcgcaaagattttgcatgcaacaaatgcgagaagaaatttggtttTAAATCAGATTGGTTTAACCACCAACAGTTagttcacgagggtcgtaaagatttcgcatgcgacaaatgtgagacgaaatttggacaaaaatcacatttgttgaagcaccaaaaaacagttcatgagggtcgcaaagattactcgtgcgacaagtgcgagcagaaatttggactaaaatggattatgattcagcaccaaaagacagttcacgaaggtcgcaaagatttcgcatgtgataagtgcgagaagaagtttacTCAAAAAACTAATTTGCTCATCCACTTAGAGACGGTACAcaaaggtcggaaagattatgcatgtaaCATGTGCGGGAAGAAATATGGACATAAAGCGAATTTGCTtggacaccaaaaaacagtacatgaaggtcgcaaagatttcgtatgcgacaaatgcgagcagacatttgccaaaaaatttaatttattcatgcatcaaaaaacagtccacgaaggtcaaaaagattatgaatgcgacaagtgcgataagaaatttgggcatttaagcaatttaaaaaaacatcaaaaaatagttcacgaaaatcgcaaagattatgcatgcaacaaatgcgagacgaaatttggacaaaaatcagatttgttaaagcaccaaagaacagtccacgacgatcgcaaagattacgcatgcgataactgcgagaagaaatttggacttaaacaCCATTGGCTtgtccaccaaaggacagtacatgatggtcgcaaagattttgcatgtgacaagtgtgacaagaaatttggacttaaaaCTTATTTGTTCTTGCACTtgaagacagtacacgaaggtcgcaaagatttcgcatgtaataagtgcgagaagaagtttacTCAAAAACCTAGTTTGCTCACCCACTTAGAGACggtacacaaagatcgaaaagattatgcttgcgacaagtgcgggaagaaatttggtaaAAAACAGAACTTgcttagacaccaaaaaacagtccatgaaggttgcaaagattacgaatgcaatAAATGCGAAAAACAATTTGGGATACAAAGCAATTTGCTacgacaccaaaagacagtacacaaaGACctcaaagattactcatgcgacgagagtgagaggaaatttggaagtaaatcagattttttgaagcaCCAAGCGACAGTTCCCAAAGACCATTAA
- Protein Sequence
- MNKSEKKSDEVASENNLSEHGIVVSDDKKYVRDICQEVFTLESNMITHQDTIHDERPNFSCNKCEKKFEFRSHLSRHQVSEHIGCNDFPCDKCEKKFVKKSSLLAHQKLVHKDREKFKCNKCEKKFENKSTLLKHKKIFHEVFKNYLCEVCAKRFDTKNSLLLHIKTVHECCQNFTCDKCKEKFRNKSDLLFHLKTVHAGRKDFACKVNKDYSFDNWERKFEKKSHLLIHLKTVHGDQKDFACDKCEKKYTQKVSLLSHQRTVHEGQKDHACDKCEKKFGLKNNLFIHKITVHEGRKDHACDKCQKKFGVLSNLIKHQKTVHEGRKDYACNRCEKRFGSKSNLIKHQKRIHNDRKDFACNKCEKKFGFKSDWFNHQQLVHEGRKDFACDKCETKFGQKSHLLKHQKTVHEGRKDYSCDKCEQKFGLKWIMIQHQKTVHEGRKDFACDKCEKKFTQKTNLLIHLETVHKGRKDYACNMCGKKYGHKANLLGHQKTVHEGRKDFVCDKCEQTFAKKFNLFMHQKTVHEGQKDYECDKCDKKFGHLSNLKKHQKIVHENRKDYACNKCETKFGQKSDLLKHQRTVHDDRKDYACDNCEKKFGLKHHWLVHQRTVHDGRKDFACDKCDKKFGLKTYLFLHLKTVHEGRKDFACNKCEKKFTQKPSLLTHLETVHKDRKDYACDKCGKKFGKKQNLLRHQKTVHEGCKDYECNKCEKQFGIQSNLLRHQKTVHKDLKDYSCDESERKFGSKSDFLKHQATVPKDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -