Tpre002770.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trichogramma pretiosum
Gene Symbol
-
Assembly
GCA_000599845.3
Location
NW:1869478-1872861[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 3.8e-07 6.2e-06 25.9 1.6 1 23 21 44 21 44 0.97
2 20 7.7e-06 0.00013 21.8 1.0 1 23 50 73 50 73 0.98
3 20 1.9e-06 3.2e-05 23.6 1.1 1 23 79 102 79 102 0.98
4 20 5.4e-05 0.00088 19.1 0.9 1 23 108 131 108 131 0.97
5 20 1.1e-06 1.8e-05 24.4 2.0 2 23 138 160 137 160 0.96
6 20 2.2e-06 3.6e-05 23.5 0.9 1 23 166 189 166 189 0.98
7 20 1.6e-06 2.7e-05 23.9 4.2 1 23 195 218 195 218 0.98
8 20 4.3e-07 7e-06 25.7 0.7 1 23 224 247 224 247 0.98
9 20 0.0042 0.069 13.1 0.3 5 23 257 276 256 276 0.95
10 20 0.00099 0.016 15.1 1.4 1 23 282 305 282 305 0.97
11 20 5.9e-07 9.6e-06 25.3 2.4 1 23 311 334 311 334 0.98
12 20 4.8 78 3.5 0.0 9 23 372 387 370 387 0.87
13 20 1.2e-05 0.0002 21.2 1.4 1 23 501 524 501 524 0.98
14 20 1.3e-05 0.00021 21.1 0.9 1 23 530 553 530 553 0.98
15 20 0.00019 0.0031 17.4 2.6 1 23 559 582 559 582 0.97
16 20 2.8e-05 0.00045 20.0 1.1 1 23 588 611 588 611 0.97
17 20 1.7e-07 2.8e-06 27.0 0.5 1 23 617 640 617 640 0.98
18 20 2.1e-06 3.4e-05 23.6 1.6 1 23 646 669 646 669 0.96
19 20 0.00011 0.0018 18.1 3.7 5 23 679 698 674 698 0.91
20 20 4.9e-06 8e-05 22.4 0.7 1 23 704 726 704 726 0.99

Sequence Information

Coding Sequence
AtgaataagataaaaaatttgaagcaaCATCAAAGATCAGTTCATGAACGACTAAAAGACTACGTTTGCAATGAGTGCCATCGAGCATTTACTCAGAAGACCAACTTGATTAGACACCAGAGAGCAGTCCACGCAGGACGAAAAGACTACGAATGCGAAGTGTgccaaaaaaagtttgcctCAAATCAGAGCTTGAGAAATCATCAAAAATCAGTTCACGCAGGACGAAAAGACTACGAATGCGAAGTGTgccaaaaaaagtttgcaacAAATCAGAACTTGAGAAATCATCAAAAAtcagttcacgaaggacgaAAGGACTACGAGTGCGACATGTgccgtaaaaaattttcagcgcgAAGCAATCTGAATATAcacaagaaaataattcacaaAGGACTAAGAGACTCCGAATGCGACGTGTGCCACAAAGTATTTTATCAGTCGAGCAATTTGAAGCAACATCAAAGATCAGTTCATGAAGGACGAAGAGATTACGTTTGCAATGAGTGCCAACGAGCATTTACTCAGAACATAAACTTGATAAGACACCACAGAATTGTTCACGAAGGACGACGGCACTACGAGTGCGAAGTGTGCCACAAAGTATTTCATCAGTCGAGCAATTTGAAGCAACATCAAAGATCAGTTCATGAAGGACGAAGAGATTACGTTTGCAATGAGTGCCAACGAGCATTTACTCAGAAGATCAACTTGATTAGACATTACAGAACAATTCACGAAGGACTAAGAGATTATGAAGATGacgtgtgtcaaaaagcatttacaagaaaatcaattttaaaacgaCACCTTAAATCAGTTCATGAACGACTAAAAGACTACGTATGCAATTTGTGTCAAATAGTATTTTCTTGTTCGGACAATTTGAAGGAACACCAAAAATCAGTTCATGAAGGACGAAGAGACTACTATTGCAAATTGTGTCCAAAAGCGTTTACGCAGAAGATCCACTTGATAAGACACCAGAGAACAGTCCACCCAGGACGAAAAGACTTGGAATGCAACGTGAAtcagaaattttcaaaccCAGTTAATGGAGAGGAACCCCAAAAAGTAGTACATGAAGAGCAAATAAAGTATGTTCCAGAAGTATGTATGACAAAAGATAACTTGACTAACCACAAAACAACTGATCACGACGAACAAAGATACTTTGAATTGCATAatgtatttcgaaaaaaattttataaaagtcaaaaagGCTATGTCAGCGACGTTGTGTTAAAAAGCGATGAATCCAATCTTcagtatttacattttaatagaGATCGAAAAACAACACTAATGGATAAGATTAAAGAAAATGACTACACTTGCGACTTGTGGGCAGGAACATTTGAAAGAGAAAGTCCTTCgtctacaaaaataaaatcggtCCACCGAggacgaaaaaattatttcatagatgtCAGCAAAAAGACAAGAGCGTTAGTTATtgacgaaggaaaaaaagtaattcagGCAAGACGAGTGGACTACGAGTGTGACGTTTGTCAAAAAAcgttttcacgaaaaattaatatgacggaacacaaaaaaacaattcacgaAGGAAGAAAGGATTACGAATGCGCCGTGTGTCAGCAAACATTTACGAAGCAGAACAGCTTGAAAAGACATCAAATAACAATTCACGAAGGACGAAAGGACTACGAATGCTACATATGCCAAAAAgcattttcaacaatattcATGTTAAAACGACACCACAAAATATTGCACGAAGGACGAAAGGACTACGAATGCTACATATGCCAAAAagcattttcaacaaaatcaattttaaaacgaCACCTTAAATCAGTTCACGAACGACTAAAAGACTACGTATGCAATGTGtgtcaaaaagtattttctcGTCTGGACAATTTAAAGGAACATCAAAGGTCAGTTCATGAAGTACGAAGAGACTACTATTGCAAATTGTGTCCAAAAGCGTTTACGCAGAAGATCCACTTGATTAGACACCAGAGAGCAGTCCACGCAGGACGAAAAGACTGCGTAGGCAACGAGTGTCAGAAAACGTTTTCTCAATGGCACAGTTTGAAGCATCACCGTAGAACAGATCATGATGAAGAAAAGAACTACAAGTGCGACGTGTGTCAAGAAGCATTTGCATATCAGAATAACTTGACGAGACACCGAAAAATTCACGAAGAACGAAACGACTTTGAGTGCAACCCGAGccagaaattattttttgggcAGGATAATGAAAAGAAACACGAAGAACTAGTTCTTGaagaacataaaaaatatgttccaGAAGTATGTACGGCAAAAGATAACTCAACCAaccaaaaaataactaatCACAACGAACAACGATATTTCGAAGTACATAatgtatttcgaaaaaaattttataaaggcCAAAAAGGCTATGTCAGCGATATTATGTCAATGAACAACTAG
Protein Sequence
MNKIKNLKQHQRSVHERLKDYVCNECHRAFTQKTNLIRHQRAVHAGRKDYECEVCQKKFASNQSLRNHQKSVHAGRKDYECEVCQKKFATNQNLRNHQKSVHEGRKDYECDMCRKKFSARSNLNIHKKIIHKGLRDSECDVCHKVFYQSSNLKQHQRSVHEGRRDYVCNECQRAFTQNINLIRHHRIVHEGRRHYECEVCHKVFHQSSNLKQHQRSVHEGRRDYVCNECQRAFTQKINLIRHYRTIHEGLRDYEDDVCQKAFTRKSILKRHLKSVHERLKDYVCNLCQIVFSCSDNLKEHQKSVHEGRRDYYCKLCPKAFTQKIHLIRHQRTVHPGRKDLECNVNQKFSNPVNGEEPQKVVHEEQIKYVPEVCMTKDNLTNHKTTDHDEQRYFELHNVFRKKFYKSQKGYVSDVVLKSDESNLQYLHFNRDRKTTLMDKIKENDYTCDLWAGTFERESPSSTKIKSVHRGRKNYFIDVSKKTRALVIDEGKKVIQARRVDYECDVCQKTFSRKINMTEHKKTIHEGRKDYECAVCQQTFTKQNSLKRHQITIHEGRKDYECYICQKAFSTIFMLKRHHKILHEGRKDYECYICQKAFSTKSILKRHLKSVHERLKDYVCNVCQKVFSRLDNLKEHQRSVHEVRRDYYCKLCPKAFTQKIHLIRHQRAVHAGRKDCVGNECQKTFSQWHSLKHHRRTDHDEEKNYKCDVCQEAFAYQNNLTRHRKIHEERNDFECNPSQKLFFGQDNEKKHEELVLEEHKKYVPEVCTAKDNSTNQKITNHNEQRYFEVHNVFRKKFYKGQKGYVSDIMSMNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-